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gtaaatacttataattacagcttatgatgccgtgctccactactttaattagcacctatatccaatattttaactttttgtagctttcactttcatacatgaacaaagGTCAGTGACATGCTCAAGAACAGAAGCACACTGAACGTTGGGGCCGATGCAGTTTCAGTGTTGAGTGGAAACCAAGAAGGAGCTTATCAATGG
species | Glycine max |
transcript | GLYMA16G04770.4 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CAGGTTTAAGGCAATTGGAAGGGGATGCTTCTGATAGGATATTGCAGGCG GTCAGTGACATGCTCAAGAACAGAAGCACACTGAACGTTGGGGCCGATGCAEST: gi|9902312|gb|BE611280.1|BE611280
genomic: CAGGTTTAAGGCAATTGGAAGGGGATGCTTCTGATAGGATATTGCAGGCGgtaaatactt ... atgaacaaagGTCAGTGACATGCTCAAGAACAGAAGCACACTGAACGTTGGGGCCGATGCA
EST: CAGGTTTAAGGCAATTGGAAGGGGATGCTTCTGATAGGATATTGCAGGCG GTCAGTGACATGCTCAAGAACAGAAGCACACTGAACGTTGGGGCCGATGCAEST: gi|151394380|gb|EV264251.1|EV264251
genomic: CAGGTTTAAGGCAATTGGAAGGGGATGCTTCTGATAGGATATTGCAGGCGgtaaatactt ... atgaacaaagGTCAGTGACATGCTCAAGAACAGAAGCACACTGAACGTTGGGGCCGATGCA
EST: CAGGTTTAAGGCAATTGGAAGGGGATGCTTCTGATAGGATATTGCAGGCG GTCAGTGACATGCTCAAGAACAGAAGCACACTGEST: gi|151404717|gb|EV274531.1|EV274531
genomic: CAGGTTTAAGGCAATTGGAAGGGGATGCTTCTGATAGGATATTGCAGGCGgtaaatactt ... atgaacaaagGTCAGTGACATGCTCAAGAACAGAAGCACACTG
EST: CAGGTTTAAGGCAATTGGAAGGGGATGCTTCTGATAGGATATTGCAGGCG GTCAGTGACATGCTCAAGAACAGAAGCACACTGAACGTTGGGGGCGATGCAEST: gi|7326536|gb|AW620334.1|AW620334
genomic: CAGGTTTAAGGCAATTGGAAGGGGATGCTTCTGATAGGATATTGCAGGCGgtaaatactt ... atgaacaaagGTCAGTGACATGCTCAAGAACAGAAGCACACTGAACGTTGGGGCCGATGCA
EST: CAGGTTTAAGGCAATTGGAAGGGGATGCTTCTGATAGGATATTGCAGGCG GTCAGTGACATGCTCAAGAACAGAAGCACACTGAACGTTGGGGCCGATGCAEST: gi|4293036|gb|AI441990.1|AI441990
genomic: CAGGTTTAAGGCAATTGGAAGGGGATGCTTCTGATAGGATATTGCAGGCGgtaaatactt ... atgaacaaagGTCAGTGACATGCTCAAGAACAGAAGCACACTGAACGTTGGGGCCGATGCA
EST: CAGGTTTAAGGCAATTGGAAGGGGATGCTTCTGATAGGATATTGCAGGCG GTCAGTGACATGCTCAAGAACAGAAGCACACTGAACGTTGGGGCCGATGCAEST: gi|23732353|gb|BU764336.1|BU764336
genomic: CAGGTTTAAGGCAATTGGAAGGGGATGCTTCTGATAGGATATTGCAGGCGgtaaatactt ... atgaacaaagGTCAGTGACATGCTCAAGAACAGAAGCACACTGAACGTTGGGGCCGATGCA
EST: CAGGTTTAAGGCAATTGGAAGGGGATGCTTCTGATAGGATATTGCAGGCG GTCAGTGACATGCTCAAGAACAGAAGCACACTGAACGTTGGGGCCGATGCAEST: gi|151409575|gb|EV279383.1|EV279383
genomic: CAGGTTTAAGGCAATTGGAAGGGGATGCTTCTGATAGGATATTGCAGGCGgtaaatactt ... atgaacaaagGTCAGTGACATGCTCAAGAACAGAAGCACACTGAACGTTGGGGCCGATGCA
EST: CAGGTTTAAGGCAATTGGAAGGGGATGCTTCTGATAGGATATTGCAGGCG GTCAGTGACATGCTCAAGAACAGAAGCACACTGAACGTTGGGGCCGATGCAEST: gi|13181122|gb|BG352462.1|BG352462
genomic: CAGGTTTAAGGCAATTGGAAGGGGATGCTTCTGATAGGATATTGCAGGCGgtaaatactt ... atgaacaaagGTCAGTGACATGCTCAAGAACAGAAGCACACTGAACGTTGGGGCCGATGCA
EST: CAGGTTTAAGGCAATTGGAAGGGGATGCTTCTGATAGGATATTGCAGGCG GTCAGTGACATGCTCAAGAACAGAAGCACACTGAACGTTGGGGCCGAT-CAEST: gi|5508917|gb|AI855475.1|AI855475
genomic: CAGGTTTAAGGCAATTGGAAGGGGATGCTTCTGATAGGATATTGCAGGCGgtaaatactt ... atgaacaaagGTCAGTGACATGCTCAAGAACAGAAGCACACTGAACGTTGGGGCCGATGCA
EST: CAGGTTTAAGGCAATTGGAAGGGGATGCTTCTGATAGGATATTGCAGGCG GTCAGTGACATGCTCAAGAACAGAAGCACACTGAACCGTGGGGGCCGATGCEST: gi|19934529|gb|BQ079559.1|BQ079559
genomic: CAGGTTTAAGGCAATTGGAAGGGGATGCTTCTGATAGGATATTGCAGGCGgtaaatactt ... atgaacaaagGTCAGTGACATGCTCAAGAACAGAAGCACACTGAA-CGTTGGGGCCGATGC
EST: CAGGTTTAAGGCAATTGGAAGGGGATGCTTCTGATAGGATATTGCAGGCG GTCAGTGACATGCTCAAGAACAGAAGCACAC
genomic: CAGGTTTAAGGCAATTGGAAGGGGATGCTTCTGATAGGATATTGCAGGCGgtaaatactt ... atgaacaaagGTCAGTGACATGCTCAAGAACAGAAGCACAC
acctatatccaatattttaactttttgtagctttcactttcatacatgaacaaagGTCAGTGACATGCTCAAGAACAGAAGCACACTGAACGTTGGGGCCGATGCAGTTTCAGTGTTGAGTGGAAACCAAGAAGGAGCTTATCAATGG
ttttaac putative branch site (score: 2)
tatccaatattttaac TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaatacttataattacagcttatgatgccgtgctccactactttaattagcacctatatccaatattttaactttttgtagctttcactttcatacatgaacaaagGTCAGTGACATGCTCAAGAACAGAAGCACACTGAACGTTGGGGCCGATGCAGTTTCAGTGTTGAGTGGAAACCAAGAAGGAGCTTATCAATGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT