1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tgtacaactagttgtcactttaactctttaatagttcattatgtaaagggcctgagtgtactgagtgtacatgtattttcaattttttatgctaatgcagGCGACTGCAGGTTTAAGGCTTTTGGAAGGGGATGCTTCTGAAAGGATATTGCAAGCG
species | Glycine max |
transcript | GLYMA16G04750.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AAAGTGTTGTCCCTGAGGACCTGTACCCTACTACACCCGTTAAGCTTGGG GCGACTGCAGGTTTAAGGCTTTTGGAAGGGGATGCTTCTGAAAGGATATTGEST: gi|192323530|gb|FK017111.1|FK017111
genomic: AAAGTGTTGTCCCTGAGGACCTGTACCCTACTACACCCGTTAAGCTTGGGgttggtgttt ... gctaatgcagGCGACTGCAGGTTTAAGGCTTTTGGAAGGGGATGCTTCTGAAAGGATATTG
EST: AAAGTGTTGTCCCTGAGGACCTGTACCCTACTACACCCGTTAAGCTTGGG GCGACTGCAGGTTTAAGGCTTTTGGAAGGGGATGCTTCTGAAAGGATATTGEST: gi|192331687|gb|FK019992.1|FK019992
genomic: AAAGTGTTGTCCCTGAGGACCTGTACCCTACTACACCCGTTAAGCTTGGGgttggtgttt ... gctaatgcagGCGACTGCAGGTTTAAGGCTTTTGGAAGGGGATGCTTCTGAAAGGATATTG
EST: AAAGTGTTGTCCCTGAGGACCTGTACCCTACTACACCCGTTAAGCTTGGG GCGACTGCAGGTTTAAGGCTTTTGGAAGGGGATGCTTCTGAAAGGATATTGEST: gi|6566238|gb|AW233919.1|AW233919
genomic: AAAGTGTTGTCCCTGAGGACCTGTACCCTACTACACCCGTTAAGCTTGGGgttggtgttt ... gctaatgcagGCGACTGCAGGTTTAAGGCTTTTGGAAGGGGATGCTTCTGAAAGGATATTG
EST: AAAGTGTTGTCCCTGAGGACCTGTACCCTACTACACCCGTTAAGCTTGGG GCGACTGCAGGTTTAAGGCTTTTGGAAGGGGATGCTTCTGAAAGGATATTG
genomic: AAAGTGTTGTCCCTGAGGACCTGTACCCTACTACACCCGTTAAGCTTGGGgttggtgttt ... gctaatgcagGCGACTGCAGGTTTAAGGCTTTTGGAAGGGGATGCTTCTGAAAGGATATTG
aagggcctgagtgtactgagtgtacatgtattttcaattttttatgctaatgcagGCGACTGCAGGTTTAAGGCTTTTGGAAGGGGATGCTTCTGAAAGGATATTGCAAGCG
tgctaat putative branch site (score: 2)
tacatgtattttcaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtacaactagttgtcactttaactctttaatagttcattatgtaaagggcctgagtgtactgagtgtacatgtattttcaattttttatgctaatgcagGCGACTGCAGGTTTAAGGCTTTTGGAAGGGGATGCTTCTGAAAGGATATTGCAAGCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - tgtcact
- - - - - - - - - - - - - - - - - - - - - - - - - - tgagtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catgtat