1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...ctgtgtgggtcattgtgataaaaaagttgatttcttagccctttttgtatgcttgtatgtatcaacattgtcattgaatgtatatttatttgtcttgcagCTTGGAGTGGATACCGTTCCGGTCCTCGTTGGCCCTGTTACATACCTGTTGCTCTCCAAGCCTGCCAAGGGAGTTGAGAAATCCTTTTCTCTCCTCTCTC
species | Glycine max |
transcript | GLYMA16G04240.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TCACCTATGCTTCTCACAAGGCTGTTGATGAATACAAGGAGGCCAAGGCG CTTGGAGTGGATACCGTTCCGGTCCTCGTTGGCCCTGTTACATACCTGTTGEST: gi|16280380|gb|BI943932.1|BI943932
genomic: TCACCTATGCTTCTCACAAGGCTGTTGATGAATACAAGGAGGCCAAGGCGgtatgtgttt ... tgtcttgcagCTTGGAGTGGATACCGTTCCGGTCCTCGTTGGCCCTGTTACATACCTGTTG
EST: ACCTATGCTTCTCACCAAGGCTGT-GATGAATACAAGGAGGCCAAGGGCG CTTG-AGTGGATACCGNTCCGEST: gi|209721161|gb|BW659187.1|BW659187
genomic: ACCTATGCTTCTCAC-AAGGCTGTTGATGAATACAAGGAGGCCAAGG-CGgtatgtgttt ... tgtcttgcagCTTGGAGTGGATACCGTTCCG
EST: TCACCTATGCTTCTCACAAGGCTGTTGATGAATACAAGGAGGCCAAGGCG CTTGGAGTGGATACCGTTCCGGTCCTCGTTGGCCCTGTTACATACCTGTTGEST: gi|16281684|gb|BI944615.1|BI944615
genomic: TCACCTATGCTTCTCACAAGGCTGTTGATGAATACAAGGAGGCCAAGGCGgtatgtgttt ... tgtcttgcagCTTGGAGTGGATACCGTTCCGGTCCTCGTTGGCCCTGTTACATACCTGTTG
EST: TCACCTATGCTTCTCACAAGGCTGTTGATGAATACAAGGAGGCCAAGGCG CTTGGAGTGGATACCGTTCCGGTCCTCGTTGGCCCTGTTACATACCTGTTGEST: gi|213596642|gb|DB956034.1|DB956034
genomic: TCACCTATGCTTCTCACAAGGCTGTTGATGAATACAAGGAGGCCAAGGCGgtatgtgttt ... tgtcttgcagCTTGGAGTGGATACCGTTCCGGTCCTCGTTGGCCCTGTTACATACCTGTTG
EST: TCACCTATGCTTCTCACAAGGCTGTTGATGAATACAAGGAGGCCAAGGCG CTTGGAGTGGATACCGTTCCGGTCCTCGTTGGCCCTGTTACATACCTGTTG
genomic: TCACCTATGCTTCTCACAAGGCTGTTGATGAATACAAGGAGGCCAAGGCGgtatgtgttt ... tgtcttgcagCTTGGAGTGGATACCGTTCCGGTCCTCGTTGGCCCTGTTACATACCTGTTG
tgtatgcttgtatgtatcaacattgtcattgaatgtatatttatttgtcttgcagCTTGGAGTGGATACCGTTCCGGTCCTCGTTGGCCCTGTTACATACCTGTTGCTCTCCAAGCCTGCCAAGGGAGTTGAGAAATCCTTTTCTCTCCTCTCTC
tttgtctt CT-rich tract
tcattgaatgtatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctgtgtgggtcattgtgataaaaaagttgatttcttagccctttttgtatgcttgtatgtatcaacattgtcattgaatgtatatttatttgtcttgcagCTTGGAGTGGATACCGTTCCGGTCCTCGTTGGCCCTGTTACATACCTGTTGCTCTCCAAGCCTGCCAAGGGAGTTGAGAAATCCTTTTCTCTCCTCTCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- gtgtggg
- - - - - - - - - taaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - -tgcttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atcaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaatgta