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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaaatattgtattttttaatattgctgcgaaactctatactttgagtagtttgccttgtgttaattttaagtattgtgtgcgatcatattggattataataatttcagGTCAGGATCAGTTTGTCTTGATGTTATCAATCAAACCTGGAGTCCCATGTTTG

Basic information

species Glycine max
transcript GLYMA16G03940.2
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7233955|gb|AW569297.1|AW569297
EST:     CCTTCCATAGGCTTTATCAATAAGATCTATCACCCAAATGTTGATGAGAT                         GTCAGGATCAGTTCGTCTTGATGTTATCAATCAAACCTGGAGTCCCATGTT
genomic: CCTTCCATAGGCTTTATCAATAAGATCTATCACCCAAATGTTGATGAGATgtaaaaatat ... ataatttcagGTCAGGATCAGTTTGTCTTGATGTTATCAATCAAACCTGGAGTCCCATGTT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccttgtgttaattttaagtattgtgtgcgatcatattggattataataatttcagGTCAGGATCAGTTTGTCTTGATGTTATCAATCAAACCTGGAGTCCCATGTTTG
     tgttaat  putative branch site (score: 3)
                             atcatattggattata  TA-rich tract