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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtatagtcaatgccaaccacttttaatgttcagtggttttgtctattgtatctaattttgaataacatggtttttatttttgcattttatcagCTCCTACTGTATCCCAAGTTATGGGCCCATTGCAATCTTCATCTGCTTTCATTGAACCTGCATACATTTATAGCCCAGATTCTTCATCTGTGCTTGGAAC

Basic information

species Glycine max
transcript GLYMA16G03640.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193680302|gb|FK624810.1|FK624810
EST:     TCGGCCAAAGAGAAAAGCTGCTCGCCCATACCCTCAAAAAGCTCCTAAAA                         CTCCTACTGTATCCCAAGTTATGGGCCCATTGCAATCTTCATCTGCTTTCA
genomic: TCGGCCAAAGAGAAAAGCTGCTCGCCCATACCCTCAAAAAGCTCCTAAAAgttagtatag ... attttatcagCTCCTACTGTATCCCAAGTTATGGGCCCATTGCAATCTTCATCTGCTTTCA
EST: gi|207795863|gb|GD764102.1|GD764102
EST:     CCGGCCAAAGAGAAAAGCTGCTCGCCCATACCCTCAAAAAGCTCCTAAAA                         CTCCTACTGTATCCCAAGTTATGGGCCCATTGCAATCTTCATC
genomic: TCGGCCAAAGAGAAAAGCTGCTCGCCCATACCCTCAAAAAGCTCCTAAAAgttagtatag ... attttatcagCTCCTACTGTATCCCAAGTTATGGGCCCATTGCAATCTTCATC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgtctattgtatctaattttgaataacatggtttttatttttgcattttatcagCTCCTACTGTATCCCAAGTTATGGGCCCATTGCAATCTTCATCTGCTTTCATTGAACCTGCATACATTTATAGCCCAGATTCTTCATCTGTGCTTGGAAC
                     gaataac  putative branch site (score: 2)
                                              ttttatc  putative PPT
              taattttgaataacat  TA-rich tract