1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaaggatatgtattctttgctaaacatttgactagttttctgttattgcctacttttccacttgcatcctatgtcatgtggattgtattttataaaaggataatttgtgcctttcaaaaaaataaataaataaataaaagaatataaggataatttgtggaagctaatcttcttttttcctcctttttgtagGTCCAGAATTTAATAGAAAGATGCCTACAGTTATATATGAATAAAGATGAAGTGGTTAAAACATTACTGACTCGGGCAAAGATAGATCCTGGATTCACAA
species | Glycine max |
transcript | GLYMA16G02860.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTGCTACAAGTAATGACAGCAAAAAAGTTTCACGGCAGGATATTGAATTT GTCCAGAATTTAATAGAAAGATGCCTACAGTTATATATGAATAAEST: gi|192315705|gb|FK011173.1|FK011173
genomic: CTGCTACAAGTAATGACAGCAAAAAAGTTTCACGGCAGGATATTGAATTTgtaaggatat ... ctttttgtagGTCCAGAATTTAATAGAAAGATGCCTACAGTTATATATGAATAA
EST: CTGCTACAAGTAATGACAGCAAAAAAGTTTCACGGCAGGATATTGAATTT GTCCAGAATTTAATAGAAAGATGCCTGCAGTTATATATGAATAAAGATGAAEST: gi|4284582|gb|AI440799.1|AI440799
genomic: CTGCTACAAGTAATGACAGCAAAAAAGTTTCACGGCAGGATATTGAATTTgtaaggatat ... ctttttgtagGTCCAGAATTTAATAGAAAGATGCCTACAGTTATATATGAATAAAGATGAA
EST: CAAGTAATGACAGCAAAAAAGTTTCACGGCAGGATATTGAATTT GTCCAGAATTTAATAGAAAGATGCCTACAGTTATATATGAATAAAGATGAA
genomic: CAAGTAATGACAGCAAAAAAGTTTCACGGCAGGATATTGAATTTgtaaggatat ... ctttttgtagGTCCAGAATTTAATAGAAAGATGCCTACAGTTATATATGAATAAAGATGAA
aagaatataaggataatttgtggaagctaatcttcttttttcctcctttttgtagGTCCAGAATTTAATAGAAAGATGCCTACAGTTATATATGAATAAAGATGAAGTGGTTAAAACATTACTGACTCGGGCAAAGATAGATCCTGGATTCACAA
agctaat putative branch site (score: 3)
ctaatcttcttttttc CT-rich tract
tataaggataattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaggatatgtattctttgctaaacatttgactagttttctgttattgcctacttttccacttgcatcctatgtcatgtggattgtattttataaaaggataatttgtgcctttcaaaaaaataaataaataaataaaagaatataaggataatttgtggaagctaatcttcttttttcctcctttttgtagGTCCAGAATTTAATAGAAAGATGCCTACAGTTATATATGAATAAAGATGAAGTGGTTAAAACATTACTGACTCGGGCAAAGATAGATCCTGGATTCACAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG