1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...aactctgtttaagatctgggggcttaattcggggaggactaatacttctctgctggatttgttgaagtttatattggctaaatgtttttcgttgatgcagGTTGATTTGTTTTTCTATAGAGAACCAGAGGAGGCTAAGCAACAAGAGGAGGAGGAAGCTCCGGCAGGTGATTATGCCATCACAGATTTCAATGCAGGTG
species | Glycine max |
transcript | GLYMA16G01460.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TATTGCAGGTGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATG TTTGATTTGTTTTTCTATAGAGAACCAGAGGAGGCTAAGCAACAAGAGGAGEST: gi|208055679|gb|GD854114.1|GD854114
genomic: TATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATGgtaaaatata ... gttgatgcagGTTGATTTGTTTTTCTATAGAGAACCAGAGGAGGCTAAGCAACAAGAGGAG
EST: TATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATG GTTGATTTGTTTTTCTATAGAGT-CCAGAGGAGGCTAAGCAACAAGAGGAGEST: gi|207755686|gb|GD728937.1|GD728937
genomic: TATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATGgtaaaatata ... gttgatgcagGTTGATTTGTTTTTCTATAGAGAACCAGAGGAGGCTAAGCAACAAGAGGAG
EST: TATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATG GTTGATTTGTTTTTCTATAGEST: gi|31461887|gb|CD403915.1|CD403915
genomic: TATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATGgtaaaatata ... gttgatgcagGTTGATTTGTTTTTCTATAG
EST: TATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATG GTTGATTTGTTTTTCTATAGAGAACCAGAGGAGGCTAAGCTACAAGAGGAGEST: gi|120531891|gb|EH260024.1|EH260024
genomic: TATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATGgtaaaatata ... gttgatgcagGTTGATTTGTTTTTCTATAGAGAACCAGAGGAGGCTAAGCAACAAGAGGAG
EST: TATTGCCGATGAGGGGTACAATTCGCCCTGGCCTCANATGGGATGTCCTG GTTGATTTGTTTTTCTATAGAGAACCEST: gi|208045196|gb|GD839730.1|GD839730
genomic: TATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATGgtaaaatata ... gttgatgcagGTTGATTTGTTTTTCTATAGAGAACC
EST: TATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATG GTTGATTTGTTTTTCTATAGAGAACCAGAGGAGGCTAAGCAACAAGAGGAGEST: gi|208329634|gb|GE127211.1|GE127211
genomic: TATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATGgtaaaatata ... gttgatgcagGTTGATTTGTTTTTCTATAGAGAACCAGAGGAGGCTAAGCAACAAGAGGAG
EST: TATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATG GTTGATTTGTTTTTCTATAGAGAACCAGAGGAGGCTAAGCAACAAGAGGAGEST: gi|193522739|gb|FK480960.1|FK480960
genomic: TATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATGgtaaaatata ... gttgatgcagGTTGATTTGTTTTTCTATAGAGAACCAGAGGAGGCTAAGCAACAAGAGGAG
EST: TATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATG GTTGATTTGTTTTTCTATAGAGAACCAGAGGEST: gi|193474615|gb|FK439296.1|FK439296
genomic: TATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATGgtaaaatata ... gttgatgcagGTTGATTTGTTTTTCTATAGAGAACCAGAGG
EST: TATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATG GTTGATTTGTTTTTCTATAGAGAACCAGAGGAGGCTAAGCAACAAGAGGAGEST: gi|19936562|gb|BQ080921.1|BQ080921
genomic: TATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATGgtaaaatata ... gttgatgcagGTTGATTTGTTTTTCTATAGAGAACCAGAGGAGGCTAAGCAACAAGAGGAG
EST: TATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATG GTTGATTTGTTTTTCTATAGAGAACCAGAGGAGGCTAAGCAACAAGAGGAGEST: gi|208036523|gb|GD834396.1|GD834396
genomic: TATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATGgtaaaatata ... gttgatgcagGTTGATTTGTTTTTCTATAGAGAACCAGAGGAGGCTAAGCAACAAGAGGAG
EST: TATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATG GTTGATTTGTTTTTCTATAGAGAACCAGAGGAGGCTAAGCAACAAGAGGAGEST: gi|9440034|gb|BE440545.1|BE440545
genomic: TATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATGgtaaaatata ... gttgatgcagGTTGATTTGTTTTTCTATAGAGAACCAGAGGAGGCTAAGCAACAAGAGGAG
EST: TATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATG GTTGATTTGTTTTTCTATAGAGAACCAGAGGAGGCTAAGCAACAAGAGGAGEST: gi|15662099|gb|BI699470.1|BI699470
genomic: TATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATGgtaaaatata ... gttgatgcagGTTGATTTGTTTTTCTATAGAGAACCAGAGGAGGCTAAGCAACAAGAGGAG
EST: TATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATG GTTGATTTGTTTTTCTATAGAGAACCAGAGGAGGCTAAGCAACAAGAGGAGEST: gi|151409225|gb|EV279033.1|EV279033
genomic: TATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATGgtaaaatata ... gttgatgcagGTTGATTTGTTTTTCTATAGAGAACCAGAGGAGGCTAAGCAACAAGAGGAG
EST: TATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATG GTTGATTTGTTTTTCTATAGAGAACCAGAGGAGGCTAAGCAACAAGAGGAGEST: gi|207844671|gb|GD813554.1|GD813554
genomic: TATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATGgtaaaatata ... gttgatgcagGTTGATTTGTTTTTCTATAGAGAACCAGAGGAGGCTAAGCAACAAGAGGAG
EST: TATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATG GTTGATTTGTTTTTCTATAGEST: gi|208186392|gb|GD982569.1|GD982569
genomic: TATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATGgtaaaatata ... gttgatgcagGTTGATTTGTTTTTCTATAG
EST: TATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATG GTTGATTTGTTTTTCTATAGAGAACCAGAGGAGGCTAAGCAACAAGAGGAGEST: gi|213604083|gb|DB974209.1|DB974209
genomic: TATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATGgtaaaatata ... gttgatgcagGTTGATTTGTTTTTCTATAGAGAACCAGAGGAGGCTAAGCAACAAGAGGAG
EST: TATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATG GTTGATTTGTTTTTCTATAGAGAACCAGAGGGA-GCTAAGCAACAAGAGGAEST: gi|207841465|gb|GD811445.1|GD811445
genomic: TATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATGgtaaaatata ... gttgatgcagGTTGATTTGTTTTTCTATAGAGAACCAGA-GGAGGCTAAGCAACAAGAGGA
EST: CCTGGCCTCAAATGGGATGTCATG GTTGATTTGTTTTTCTATAGAGAACCAGAAGAGGCTAAGCAACAAGAGGAGEST: gi|208206348|gb|GE004197.1|GE004197
genomic: CCTGGCCTCAAATGGGATGTCATGgtaaaatata ... gttgatgcagGTTGATTTGTTTTTCTATAGAGAACCAGAGGAGGCTAAGCAACAAGAGGAG
EST: TATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATG GTTGATTTGTTTTTCTATAGAGAACCAGAGGAGGCTAAGCAACAAGAGGAGEST: gi|193456381|gb|FK421769.1|FK421769
genomic: TATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATGgtaaaatata ... gttgatgcagGTTGATTTGTTTTTCTATAGAGAACCAGAGGAGGCTAAGCAACAAGAGGAG
EST: CTCAAATGGGATGTCATG GTTGATTTGTTTTTCTATAGAGAACCAGAGGAGGCTAAEST: gi|6072377|gb|AW101764.1|AW101764
genomic: CTCAAATGGGATGTCATGgtaaaatata ... gttgatgcagGTTGATTTGTTTTTCTATAGAGAACCAGAGGAGGCTAA
EST: TATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATG GTTGATTTGTTTTTCTATAGAGAACCAGAGGAGGCTAAGCAACAAGAGGAGEST: gi|14011580|gb|BG726502.1|BG726502
genomic: TATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATGgtaaaatata ... gttgatgcagGTTGATTTGTTTTTCTATAGAGAACCAGAGGAGGCTAAGCAACAAGAGGAG
EST: TATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATG GTTGATTTGTTTTTCTATAGAGAACCAGAGGAGGCTAAGCAACAAGAGGAGEST: gi|193341526|gb|FK308866.1|FK308866
genomic: TATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATGgtaaaatata ... gttgatgcagGTTGATTTGTTTTTCTATAGAGAACCAGAGGAGGCTAAGCAACAAGAGGAG
EST: TATTACAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATG GTTGATTTGTTTTTCTATAGAGAACCAGAGGAGGCTAAGCAACAAGAGGAGEST: gi|207785824|gb|GD757895.1|GD757895
genomic: TATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATGgtaaaatata ... gttgatgcagGTTGATTTGTTTTTCTATAGAGAACCAGAGGAGGCTAAGCAACAAGAGGAG
EST: TATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATG GTTGATTTGTTTTTCTATAGEST: gi|208178766|gb|GD979587.1|GD979587
genomic: TATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATGgtaaaatata ... gttgatgcagGTTGATTTGTTTTTCTATAG
EST: TATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATG GTTGATTTGTTTTTCTATAGAGAACCAGAGGAGGCTAAGCAACAAGAGGAGEST: gi|193624105|gb|FK576043.1|FK576043
genomic: TATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATGgtaaaatata ... gttgatgcagGTTGATTTGTTTTTCTATAGAGAACCAGAGGAGGCTAAGCAACAAGAGGAG
EST: TATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATG GTTGATTTGTTTTTCTATAGAGAAACCAGAAGAGGCTAAGCAACAAGAGGGEST: gi|193663796|gb|FK612424.1|FK612424
genomic: TATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATGgtaaaatata ... gttgatgcagGTTGATTTGTTTTTCTATAGAGAA-CCAGAGGAGGCTAAGCAACAAGAGGA
EST: TATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATG GTTGATTTGTTTTEST: gi|207798126|gb|GD769950.1|GD769950
genomic: TATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATGgtaaaatata ... gttgatgcagGTTGATTTGTTTT
EST: TATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATG GTTGATTTGTTTTTCTATAGAGAACCAGAGGAGGCTAAGCAACAAGAGGAGEST: gi|208139479|gb|GD937265.1|GD937265
genomic: TATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATGgtaaaatata ... gttgatgcagGTTGATTTGTTTTTCTATAGAGAACCAGAGGAGGCTAAGCAACAAGAGGAG
EST: TATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATG GTTGATTTGTTTTTCTATAGAGAACCAGAGGAGGCTAAGCAACAAGAGGAGEST: gi|193716900|gb|FK654668.1|FK654668
genomic: TATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATGgtaaaatata ... gttgatgcagGTTGATTTGTTTTTCTATAGAGAACCAGAGGAGGCTAAGCAACAAGAGGAG
EST: TATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATG GTTGATTTGTTTTTCTATAGAGAACCAGAGGAGGCTAAGCAAACAAGAGGAEST: gi|208062060|gb|GD855854.1|GD855854
genomic: TATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATGgtaaaatata ... gttgatgcagGTTGATTTGTTTTTCTATAGAGAACCAGAGGAGGCTAAGCAA-CAAGAGGA
EST: TATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATG GTTGATTTGTTTTTCTATAGAGAACCAGAGGAGGCTAAGCAACAAGAGGEST: gi|208162220|gb|GD961775.1|GD961775
genomic: TATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATGgtaaaatata ... gttgatgcagGTTGATTTGTTTTTCTATAGAGAACCAGAGGAGGCTAAGCAACAAGAGG
EST: TATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATG GTTGATTTGTTTTTCTATAGAGAACCAGAGGAGGCTAAGCAEST: gi|193499393|gb|FK460348.1|FK460348
genomic: TATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATGgtaaaatata ... gttgatgcagGTTGATTTGTTTTTCTATAGAGAACCAGAGGAGGCTAAGCA
EST: TATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATG GTTGATTTGTTTTTCTATAGAGAACCAGAGGAGGCTAAGCAACEST: gi|23727440|gb|BU761750.1|BU761750
genomic: TATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATGgtaaaatata ... gttgatgcagGTTGATTTGTTTTTCTATAGAGAACCAGAGGAGGCTAAGCAAC
EST: TATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATG GTTGATTTGTTTTTCTATAGAGAACCAGAGGAGGCTAAGCAACAAGAGGAGEST: gi|16348783|gb|BI974378.1|BI974378
genomic: TATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATGgtaaaatata ... gttgatgcagGTTGATTTGTTTTTCTATAGAGAACCAGAGGAGGCTAAGCAACAAGAGGAG
EST: TATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATG GTTGATTTGTTTTTCTATAGAGAACCAGAGGAGGCTAAGCAACAAGAGGAGEST: gi|193635938|gb|FK582967.1|FK582967
genomic: TATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATGgtaaaatata ... gttgatgcagGTTGATTTGTTTTTCTATAGAGAACCAGAGGAGGCTAAGCAACAAGAGGAG
EST: TATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATG GTTAATTTGTTTTTCTATAGAGAACEST: gi|208132975|gb|GD931650.1|GD931650
genomic: TATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATGgtaaaatata ... gttgatgcagGTTGATTTGTTTTTCTATAGAGAAC
EST: TATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATG GTTGATTTGTTTTTCTATAGAGAACCAGAGGAGGCTAAGCAACAAGAGGAGEST: gi|208053576|gb|GD850549.1|GD850549
genomic: TATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATGgtaaaatata ... gttgatgcagGTTGATTTGTTTTTCTATAGAGAACCAGAGGAGGCTAAGCAACAAGAGGAG
EST: TATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGAATGTCATG GTTGATTTGTTTTTCTATAGAGAACCAGAGGTGGCTAAGCAACAAGAGGAGEST: gi|208099972|gb|GD897611.1|GD897611
genomic: TATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATGgtaaaatata ... gttgatgcagGTTGATTTGTTTTTCTATAGAGAACCAGAGGAGGCTAAGCAACAAGAGGAG
EST: TATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATG GTTGATTTGTTTTTCTATAGAGAACCAGAGGAGGCTAAGCAACAAGAGGAGEST: gi|193459036|gb|FK422893.1|FK422893
genomic: TATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATGgtaaaatata ... gttgatgcagGTTGATTTGTTTTTCTATAGAGAACCAGAGGAGGCTAAGCAACAAGAGGAG
EST: TATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATG GTTGATTTGTTTTTCTATAGAGAACCAGAGGAGGCTAAGCAACAAGAGGAGEST: gi|207823172|gb|GD797025.1|GD797025
genomic: TATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATGgtaaaatata ... gttgatgcagGTTGATTTGTTTTTCTATAGAGAACCAGAGGAGGCTAAGCAACAAGAGGAG
EST: TATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATG GTTGATTTGTTTTTCTATAGEST: gi|11687966|gb|BF595642.1|BF595642
genomic: TATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATGgtaaaatata ... gttgatgcagGTTGATTTGTTTTTCTATAG
EST: TATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATG GTTGATTTGTTTTTCTATAGAGAACCAGAGGAGGCTAAGCAACAAGAGGAGEST: gi|18039449|gb|BM307743.1|BM307743
genomic: TATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATGgtaaaatata ... gttgatgcagGTTGATTTGTTTTTCTATAGAGAACCAGAGGAGGCTAAGCAACAAGAGGAG
EST: TATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATG GTTGATTTGTTTTTCTATAGAGAACCAGAGGAGGCTAAGCAACAAGAGGAG
genomic: TATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATGgtaaaatata ... gttgatgcagGTTGATTTGTTTTTCTATAGAGAACCAGAGGAGGCTAAGCAACAAGAGGAG
ttctctgctggatttgttgaagtttatattggctaaatgtttttcgttgatgcagGTTGATTTGTTTTTCTATAGAGAACCAGAGGAGGCTAAGCAACAAGAGGAGGAGGAAGCTCCGGCAGGTGATTATGCCATCACAGATTTCAATGCAGGTG
tttttcgtt CT-rich tract
ttgaagtttatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aactctgtttaagatctgggggcttaattcggggaggactaatacttctctgctggatttgttgaagtttatattggctaaatgtttttcgttgatgcagGTTGATTTGTTTTTCTATAGAGAACCAGAGGAGGCTAAGCAACAAGAGGAGGAGGAAGCTCCGGCAGGTGATTATGCCATCACAGATTTCAATGCAGGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - tgggggc
- - - - - - - - - - - - - - - ggggagg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttgaa