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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gcatgataaaaaaatttagctttaaattgatgcttgactcttggtaaattttgatttttgacgtttgcttgcagTGCTGCTCTTGCTCATATTATTTTACGGGAGAGGCTACATATTTTTGGAATTCTCGGTTGTGTTTTGTGTGTTGTGGGATCTACGACAATTGTTTTGCAT

Basic information

species Glycine max
transcript GLYMA16G00560.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G00560.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv12s0035g00720.t01 (Vitis vinifera), 3'ss of exon 3
gcatgataaaaaaatttagctttaaattgatgcttgactcttgg--taaattttgatttttgacgtttgcttgcagTGCTGCTCTTGCTCATATTATTTTACGGGAGAGGCTACATATTTTTGGAATTCTCGGTTGTGTTTTGTGTGTTGTGGGATCTACGACAATTGTTTTGCAT
||||||||  ||  ||   || ||  || |   ||||     |   | | |  ||| || | |  ||  | ||||||||||  |||||||||||||||||| |||||| |||||| |||||||| ||||| ||||||||| | ||||||||||| ||||| ||||||||| | |||
gcatgatagcaag-ttgcactatattttaaaatttgatctccgagtttagtgctgacttct-atattgtcatgcagTGCTGTACTTGCTCATATTATTTTAAGGGAGAAGCTACACATTTTTGGGATTCTTGGTTGTGTTCTTTGTGTTGTGGGTTCTACAACAATTGTTCTTCAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120530522|gb|EH258655.1|EH258655
EST:     TGCTCTTAGCATTATTATCAG                         TGCTGCTCTTGCTCATATTATTTTACGGGAGAGGCTACATATTTTTGGAAT
genomic: TGCTCTTAGCATTATTATCAGgcatgataaa ... ttgcttgcagTGCTGCTCTTGCTCATATTATTTTACGGGAGAGGCTACATATTTTTGGAAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctttaaattgatgcttgactcttggtaaattttgatttttgacgtttgcttgcagTGCTGCTCTTGCTCATATTATTTTACGGGAGAGGCTACATATTTTTGGAATTCTCGGTTGTGTTTTGTGTGTTGTGGGATCTACGACAATTGTTTTGCAT
                                    ttttgac  putative branch site (score: 3)
                                            tttgctt  CT-rich tract
                         taaattttgatttttg  TA-rich tract