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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtgaaatatctatatcgaagaactaatttgcaaaattcttaattccttgctgacttatatatgtgtgtgtgtgtataatataatataatataactggtttaattcatttacttcttcttttctttctgtggtctagCTCAATATTGATCCTGAATCTTTAAAGCCAAAGCTTCCAAGTCGAAAAGAGCTTAAGCCTTATCCCACAACTTGCTATATCGAGTATAAAGGCCATGAAG

Basic information

species Glycine max
transcript GLYMA16G00540.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G00540.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv00s0227g00060.t01 (Vitis vinifera), 3'ss of exon 9
gtgagtgaaatatctatatcgaagaactaatttgcaaaattcttaattccttgctgacttatatatgtgtgtgtgtgtataatataatataatataactggtttaattcatttacttcttcttttctttctgtggtctagCTCAATATTGATCCTGAATCTTTAAAGCCAAAGCTTCCAAGTCGAAAAGAGCTTAAGCCTTATCCCACAACTTGCTATATCGAGTATAAAGGCCATGAAG
|| |||||     | | || | ||||  || |    |||||  | | | || | ||| |   | || |   ||| | | | |||  || |   ||||     ||||   |   || |  | |||| |        ||||| ||||||||||||| |||||||| ||||| || || || ||||||||||| ||||||||||| ||   ||| |||||| ||||||||||||| ||  | |
gtaagtgag----ccagattggagaa--aaat----aaatt--tgagtgctggttgaatgtcaaatata-atgtttctctcataagatctggaataatcaaattaacaaa---acatgcttttttatcat-----tctagATCAATATTGATCCCGAATCTTTGAAGCCCAAACTACCTAGTCGAAAAGATCTTAAGCCTTACCCAGTAACATGCTATCTCGAGTATAAAGGTCACAAGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13312527|gb|BG406178.1|BG406178
EST:     TTGAACGGTGTTTGGATTTGTACTTGTGCCCTCGAGTTCGGAAAAAACGC                         CTCAATATTGATCCTGAATCTTTAAAGCCAAAGCTTCCAAGTCGAAAAGAG
genomic: TTGAACGGTGTTTGGATTTGTACTTGTGCCCTCGAGTTCGGAAAAAACGCgtgagtgaaa ... tgtggtctagCTCAATATTGATCCTGAATCTTTAAAGCCAAAGCTTCCAAGTCGAAAAGAG
EST: gi|208153948|gb|GD958361.1|GD958361
EST:     TTGAACGGTGTTTGGATTTGTACTTGTGCCCTCGAGTTCGGAAAAAACGC                         CTCAATATTGATCCTGAATCTTTAAAGCCAAAGCTTCCAAGTCGAAAAGAG
genomic: TTGAACGGTGTTTGGATTTGTACTTGTGCCCTCGAGTTCGGAAAAAACGCgtgagtgaaa ... tgtggtctagCTCAATATTGATCCTGAATCTTTAAAGCCAAAGCTTCCAAGTCGAAAAGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatataatataactggtttaattcatttacttcttcttttctttctgtggtctagCTCAATATTGATCCTGAATCTTTAAAGCCAAAGCTTCCAAGTCGAAAAGAGCTTAAGCCTTATCCCACAACTTGCTATATCGAGTATAAAGGCCATGAAG
                tttaattcatttactt  CT-rich tract
                tttaattcatttactt  TA-rich tract