1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtgagttttcttttgtaaaccccatcttgtttatcgtatttcagacatgctgatgataccttcttcattttattaatgcttttatcagGCCAAATGTAGAGAAACGGGAGAAATTGTGGCCATCAAGAAAGTTCTCCAGGACAAGCGCTACAAGAATAGAGAGTTACAAATTATGCAAATGCTGGATC
species | Glycine max |
transcript | GLYMA16G00400.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATATTTCTGAGCATGTTGTGGGAACAGGCTCTTTTGGTGTTGTTTTTCAA GCCAAATGTAGAGAAACGGGAGAAATTGTGGCCATCAAGAAAGTTCTCCAGEST: gi|209717538|gb|BW679672.1|BW679672
genomic: ATATTTCTGAGCATGTTGTGGGAACAGGCTCTTTTGGTGTTGTTTTTCAAgtgagttttc ... cttttatcagGCCAAATGTAGAGAAACGGGAGAAATTGTGGCCATCAAGAAAGTTCTCCAG
EST: ATATTTCTGAGCATGTTGTGGGAACAGGCTCTTTTGGTGTTGTTTTTCAA GCCAAATGTAGAGAAACGGGAGAAATTGTGGCCATCAAGAAAGTTCTCCAGEST: gi|207811805|gb|GD783054.1|GD783054
genomic: ATATTTCTGAGCATGTTGTGGGAACAGGCTCTTTTGGTGTTGTTTTTCAAgtgagttttc ... cttttatcagGCCAAATGTAGAGAAACGGGAGAAATTGTGGCCATCAAGAAAGTTCTCCAG
EST: ATATTTCTGAGCATGTTGTGGGAACAGGCTCTTTTGGTGTTGTTTTTCAA GCCAAATGTAGAGAAACGGGAGAAATTGTGGCCATCAAGAAAGTTCTCCAGEST: gi|26047783|gb|CA784461.1|CA784461
genomic: ATATTTCTGAGCATGTTGTGGGAACAGGCTCTTTTGGTGTTGTTTTTCAAgtgagttttc ... cttttatcagGCCAAATGTAGAGAAACGGGAGAAATTGTGGCCATCAAGAAAGTTCTCCAG
EST: ATATTTCTGAGCATGTTGTGGGAACAGGCTCTTTTGGTGTTGTTTTTCAA GCCAAATGTAGAGAAACGGGAGAAATTGTGGCCATCAAGAAAGTTCTCCAGEST: gi|26048721|gb|CA785174.1|CA785174
genomic: ATATTTCTGAGCATGTTGTGGGAACAGGCTCTTTTGGTGTTGTTTTTCAAgtgagttttc ... cttttatcagGCCAAATGTAGAGAAACGGGAGAAATTGTGGCCATCAAGAAAGTTCTCCAG
EST: ATATTTCTGAGCATGTTGTGGGAACAGGCTCTTTTGGTGTTGTTTTTCAA GCCAAATGTAGAGAAACGGGAGAAATTGTGGCCATCAAGAAAGTTCTCCAGEST: gi|208296892|gb|GE096530.1|GE096530
genomic: ATATTTCTGAGCATGTTGTGGGAACAGGCTCTTTTGGTGTTGTTTTTCAAgtgagttttc ... cttttatcagGCCAAATGTAGAGAAACGGGAGAAATTGTGGCCATCAAGAAAGTTCTCCAG
EST: ATATTTCTGAGCATGTTGTGGGAACAGGCTCTTTTGGTGTTGTTTT-CAA GCCAAATGTAGAGAAACGGGAGAAATTGTGGCCATCAAGAAAGTTCTCCAGEST: gi|4295066|gb|AI442280.1|AI442280
genomic: ATATTTCTGAGCATGTTGTGGGAACAGGCTCTTTTGGTGTTGTTTTTCAAgtgagttttc ... cttttatcagGCCAAATGTAGAGAAACGGGAGAAATTGTGGCCATCAAGAAAGTTCTCCAG
EST: ATATTTCTGAGCATGTTGTGGGAACAGGCTCTTTTGGTGTTGTTTTTCAA GCCAAATGTAGAGAAACGGGAGAAATTGTGGCCATCAAGAAAGTTCTCCAGEST: gi|209719804|gb|BW674956.1|BW674956
genomic: ATATTTCTGAGCATGTTGTGGGAACAGGCTCTTTTGGTGTTGTTTTTCAAgtgagttttc ... cttttatcagGCCAAATGTAGAGAAACGGGAGAAATTGTGGCCATCAAGAAAGTTCTCCAG
EST: ATATTTCTGAGCATGTTGTGGGAACAGGCTCTTTTGGTGTTGTTTTTCAA GCCAAATGTAGAGAAACGGGAGAAATTGTGGCCATCAAGAAAGTTCTCCAGEST: gi|20813050|gb|BQ297528.1|BQ297528
genomic: ATATTTCTGAGCATGTTGTGGGAACAGGCTCTTTTGGTGTTGTTTTTCAAgtgagttttc ... cttttatcagGCCAAATGTAGAGAAACGGGAGAAATTGTGGCCATCAAGAAAGTTCTCCAG
EST: ATATTTCTGAGCATGTTGTGGGAACAGGCTCTTTTGGTGTTGTTTTTCAA GCCAAATGTAGAGAAACGGGAGAAATTGTGGCCATCAAGAAAGTTCTCCAGEST: gi|151403853|gb|EV273663.1|EV273663
genomic: ATATTTCTGAGCATGTTGTGGGAACAGGCTCTTTTGGTGTTGTTTTTCAAgtgagttttc ... cttttatcagGCCAAATGTAGAGAAACGGGAGAAATTGTGGCCATCAAGAAAGTTCTCCAG
EST: ATATTTCTGAGCATGTTGTGGGAACAGGCTCTTTTGGTGTTGTTTTTCAA GCCAAATGTAGAGAAACGGGAGAAATTGTGGCCATCAAGAAAGTTCTCCAG
genomic: ATATTTCTGAGCATGTTGTGGGAACAGGCTCTTTTGGTGTTGTTTTTCAAgtgagttttc ... cttttatcagGCCAAATGTAGAGAAACGGGAGAAATTGTGGCCATCAAGAAAGTTCTCCAG
tcgtatttcagacatgctgatgataccttcttcattttattaatgcttttatcagGCCAAATGTAGAGAAACGGGAGAAATTGTGGCCATCAAGAAAGTTCTCCAGGACAAGCGCTACAAGAATAGAGAGTTACAAATTATGCAAATGCTGGATC
tattaat putative branch site (score: 2)
cttttatc CT-rich tract
ttcattttattaatgc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagttttcttttgtaaaccccatcttgtttatcgtatttcagacatgctgatgataccttcttcattttattaatgcttttatcagGCCAAATGTAGAGAAACGGGAGAAATTGTGGCCATCAAGAAAGTTCTCCAGGACAAGCGCTACAAGAATAGAGAGTTACAAATTATGCAAATGCTGGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA