Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatctttcttttctttctattgtacgcttttcttttctttttaattttatcttcacttttgtgattttctcctttcagTTGCTCGACTCAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATAAT

Basic information

species Glycine max
transcript GLYMA16G00360.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192332370|gb|FK026035.1|FK026035
EST:     GGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCCATTGCTCGTTACG                         TTGCTCGACTCAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATA
genomic: GGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCCATTGCTCGTTACGgtatctttct ... ctcctttcagTTGCTCGACTCAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATA
EST: gi|213607318|gb|DB965148.1|DB965148
EST:     GGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCCATTGCTCGTTACG                         TTGCTCGACTCAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATA
genomic: GGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCCATTGCTCGTTACGgtatctttct ... ctcctttcagTTGCTCGACTCAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATA
EST: gi|209699300|gb|BW670264.1|BW670264
EST:     GGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCCATTGCTCGTTACG                         TTGCTCGACTCAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATA
genomic: GGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCCATTGCTCGTTACGgtatctttct ... ctcctttcagTTGCTCGACTCAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATA
EST: gi|208282952|gb|GE079818.1|GE079818
EST:     GGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCCATTGCTCGTTACG                         TTGCTCGACTCAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATA
genomic: GGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCCATTGCTCGTTACGgtatctttct ... ctcctttcagTTGCTCGACTCAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATA
EST: gi|213587829|gb|DB959653.1|DB959653
EST:     GGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCCATTGCTCGTTACG                         TTGCTCGACTCAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATA
genomic: GGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCCATTGCTCGTTACGgtatctttct ... ctcctttcagTTGCTCGACTCAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATA
EST: gi|192322478|gb|FK014959.1|FK014959
EST:     GGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCCATTGCTCGTTACG                         TTGCTCGACTCAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATA
genomic: GGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCCATTGCTCGTTACGgtatctttct ... ctcctttcagTTGCTCGACTCAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATA
EST: gi|213615347|gb|DB963541.1|DB963541
EST:     GGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCCATTGCTCGTTACG                         TTGCTCGACTCAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATA
genomic: GGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCCATTGCTCGTTACGgtatctttct ... ctcctttcagTTGCTCGACTCAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATA
EST: gi|17023211|gb|BM094245.1|BM094245
EST:     GGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCCATTGCTCGTTACG                         TTGCTCGACTCAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATA
genomic: GGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCCATTGCTCGTTACGgtatctttct ... ctcctttcagTTGCTCGACTCAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATA
EST: gi|213617072|gb|DB961552.1|DB961552
EST:     GGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCCATTGCTCGTTACG                         TTGCTCGACTCAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATA
genomic: GGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCCATTGCTCGTTACGgtatctttct ... ctcctttcagTTGCTCGACTCAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATA
EST: gi|208126057|gb|GD926029.1|GD926029
EST:     GGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCCATTGCTCGTTACG                         TTGCTCGACTCAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATA
genomic: GGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCCATTGCTCGTTACGgtatctttct ... ctcctttcagTTGCTCGACTCAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATA
EST: gi|209714829|gb|BW674315.1|BW674315
EST:     GGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCCATTGCTCGTTACG                         TTGCTCGACTCAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATA
genomic: GGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCCATTGCTCGTTACGgtatctttct ... ctcctttcagTTGCTCGACTCAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATA
EST: gi|213596059|gb|DB966306.1|DB966306
EST:     GGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCCATTGCTCGTTACG                         TTGCTCGACTCAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATA
genomic: GGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCCATTGCTCGTTACGgtatctttct ... ctcctttcagTTGCTCGACTCAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATA
EST: gi|254343639|gb|GR857395.1|GR857395
EST:     GGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCCATTGCTCGTTACG                         TTGCTCGACTCAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATA
genomic: GGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCCATTGCTCGTTACGgtatctttct ... ctcctttcagTTGCTCGACTCAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATA
EST: gi|209706650|gb|BW676159.1|BW676159
EST:     GGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCCATTGCTCGTTACG                         TTGCTCGACTCAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATA
genomic: GGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCCATTGCTCGTTACGgtatctttct ... ctcctttcagTTGCTCGACTCAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATA
EST: gi|213600558|gb|DB960106.1|DB960106
EST:     GGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCCATTGCTCGTTACG                         TTGCTCGACTCAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATA
genomic: GGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCCATTGCTCGTTACGgtatctttct ... ctcctttcagTTGCTCGACTCAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATA
EST: gi|192329460|gb|FK021858.1|FK021858
EST:     GGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCCATTGCTCGTTACG                         TTGCTCGACTCAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATA
genomic: GGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCCATTGCTCGTTACGgtatctttct ... ctcctttcagTTGCTCGACTCAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATA
EST: gi|213611109|gb|DB972697.1|DB972697
EST:     GGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCCATTGCTCGTTACG                         TTGCTCGACTCAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATA
genomic: GGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCCATTGCTCGTTACGgtatctttct ... ctcctttcagTTGCTCGACTCAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acgcttttcttttctttttaattttatcttcacttttgtgattttctcctttcagTTGCTCGACTCAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATAAT
               ttttaat  putative branch site (score: 3)
                          tcttcacttttgtgat  putative PPT
         ttttctttttaatttt  TA-rich tract