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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaactagtgagcttttgaggcaaagttacttcttggtagttcattgttgttatctttttgtcttacacaccgttaatttgtttttaccagGTCAGCTTTGTTAATTCCATTGCTACAATCAAGGGTGGGACTCATGTTGATTACGTCACCAATCAGATTACAAACTTTGTGATGAATAAAGTAAATAAGA

Basic information

species Glycine max
transcript GLYMA15G43170.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G43170.1 (Glycine max), 3'ss of exon 3
lower sequence: AT3G23890.1 (Arabidopsis thaliana), 3'ss of exon 3
gtaactagtgagcttttgaggcaaagttacttcttggtagttcattgttgttatctttttgtcttacacaccgttaatttgtttttaccagGTCAGCTTTGTTAATTCCATTGCTACAATCAAGGGTGGGACTCATGTTGATTACGTCACCAATCAGATTACAAACTTTGTGATGAATAAAGTAAATAAGA
       ||  |  ||||       |||| |  ||  |  |    ||  |      ||  ||||||   ||| ||  | || |  ||||||||||||||||| || ||||| || |||||||||||||| || |||||||| || || || | |||||||||||||  | |  ||  |   || || || |
-------gtatgtatttggttggctgttattattttttgttgttatgaagaatgagttaagtcttaacaaccttt--tctgctgctaccagGTCAGCTTTGTCAACTCCATAGCAACAATCAAGGGTGGTACACATGTTGACTATGTGACGAGTCAGATTACAAACCATATTGTGGCTGCTGTGAACAAAA

upper sequence: GLYMA15G43170.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv13s0064g00560.t01 (Vitis vinifera), 3'ss of exon 3
gtaa--ctagtgagcttttgaggcaaagttacttcttgg--tagttcattgttgttatctt---tttgtcttacacaccgt----taatttgt------------ttttaccagGTCAGCTTTGTTAATTCCATTGCTACAATCAAGGGTGGGACTCATGTTGATTACGTCACCAATCAGATTACAAACTTTGTGATGAATAAAGTAAATAAGA
||||  ||    |   ||| |  || |  ||  | |||   || || |    ||  | ||    ||| | |||   | | |    |||||| |            ||| ||||||||||||| || |||   || || || ||||||||||||||||||||||||||||| ||||| |||||| |||||||||| |||| ||  || |||||||
gtaatactgagaaaagtttaaaccagaaatatattttgaattaatttagcagtgcaagctactatttcttttatgaaacttaacataatttatggggatgaatgatttgaccagGTCAGCTTCGTAAATAGTATCGCCACGATCAAGGGTGGGACTCATGTTGATTACGTTACCAACCAGATTGCAAACTTTGTAATGAGTATTGTCAATAAGA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208067757|gb|GD866125.1|GD866125
EST:     GTGAAAGGTGGGAGATTTGCGTGAGTCTAAGTGACGGGCAGTTTCAACAG                         GTCAGCTTTGTTAATTCCATTGCTACAAT
genomic: GTGAAAGGTGGGAGATTTGCGTGAGTCTAAGTGACGGGCAGTTTCAACAGgtaactagtg ... tttttaccagGTCAGCTTTGTTAATTCCATTGCTACAAT
EST: gi|193484514|gb|FK451164.1|FK451164
EST:     GTGAAAGGTGGGAGATTTGCGTGAGTCTAAGTGACGGGCAGTTTCAACAG                         GTCAGCTTTGTTAATTCCATTG
genomic: GTGAAAGGTGGGAGATTTGCGTGAGTCTAAGTGACGGGCAGTTTCAACAGgtaactagtg ... tttttaccagGTCAGCTTTGTTAATTCCATTG
EST: gi|208124624|gb|GD921550.1|GD921550
EST:     GTGAAAGGTGGGAGATTTGCGTGAGTCTAAGTGACGGGCAGTTTCAACAG                         GTCAGCTTTGTTAATTCCATTGCTACAATCAAGGGTGGGACTCATGTTGAT
genomic: GTGAAAGGTGGGAGATTTGCGTGAGTCTAAGTGACGGGCAGTTTCAACAGgtaactagtg ... tttttaccagGTCAGCTTTGTTAATTCCATTGCTACAATCAAGGGTGGGACTCATGTTGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtagttcattgttgttatctttttgtcttacacaccgttaatttgtttttaccagGTCAGCTTTGTTAATTCCATTGCTACAATCAAGGGTGGGACTCATGTTGATTACGTCACCAATCAGATTACAAACTTTGTGATGAATAAAGTAAATAAGA
                                         tttgttttt  CT-rich tract
                                     ttaatttgttttta  TA-rich tract