1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
...ttagctatgcattttctattttggtctttcccctggatagattcttgtttattgccccttgcaggtgaatgattacttttctcccttaactccttttcagCATCATTGGCAAGGGACTATTACGAAGTGCTTGGTGTGAGTAAGAATGCGAGTTCTTCTGAAATAAAGAAAGCATACTATGGG
species | Glycine max |
transcript | GLYMA15G42640.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGGAGCCGCAAATACATATTGGGGGACATCTAGATCCATTCATGGGTCAG CATCATTGGCAAGGGACTATTACGAAGTGCTTGGTGTGAGTAAGAATGCGAEST: gi|9257966|gb|BE346175.1|BE346175
genomic: TGGAGCCGCAAATACATATTGGGGGACATCTAGATCCATTCATGGGTCAGgtataaaata ... tccttttcagCATCATTGGCAAGGGACTATTACGAAGTGCTTGGTGTGAGTAAGAATGCGA
EST: TGGAGCCGCAAATACATATTGGGGGACATCTAGATCCATTCATGGGTCAG CATCATTGGCAAGGGACTATTACGAAGTGCTTGGTGTGAGTAAGAATGCGA
genomic: TGGAGCCGCAAATACATATTGGGGGACATCTAGATCCATTCATGGGTCAGgtataaaata ... tccttttcagCATCATTGGCAAGGGACTATTACGAAGTGCTTGGTGTGAGTAAGAATGCGA
tgtttattgccccttgcaggtgaatgattacttttctcccttaactccttttcagCATCATTGGCAAGGGACTATTACGAAGTGCTTGGTGTGAGTAAGAATGCGAGTTCTTCTGAAATAAAGAAAGCATACTATGGG
ccttaac putative branch site (score: 3)
ttacttttctccctta CT-rich tract
attactttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttagctatgcattttctattttggtctttcccctggatagattcttgtttattgccccttgcaggtgaatgattacttttctcccttaactccttttcagCATCATTGGCAAGGGACTATTACGAAGTGCTTGGTGTGAGTAAGAATGCGAGTTCTTCTGAAATAAAGAAAGCATACTATGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - -tgcattt
- - - - - - - - - - - - - tttcccc
- - - - - - - - - - - - - - - - - - - - - - - - - - tgcccct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcaggt