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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgccaaaattcatactttttgacctcacaaataattacttgaagtaaattatgctcatatttcctcgtaattcccataagttacaaagtgttttgttcatatttcagGTCAAGACTGTATTTATGCCAACAGGAGTGTCTCTTACATCAGAGAGTATTGCCCCACTTGTTGCAACACTTCCCTTAGAG

Basic information

species Glycine max
transcript GLYMA15G42140.2
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10845800|gb|BF068842.1|BF068842
EST:     TAAGCTTTTCTGAATGTGGAGGGATTGAAATTGAGGAGAATTGGGATAAG                         GTCAAGACTGTATTTATGCCAACAGGAGTGTCTCTTACATCAGAGAGTATT
genomic: TAAGCTTTTCTGAATGTGGAGGGATTGAAATTGAGGAGAATTGGGATAAGgtgccaaaat ... catatttcagGTCAAGACTGTATTTATGCCAACAGGAGTGTCTCTTACATCAGAGAGTATT
EST: gi|19938061|gb|BQ081542.1|BQ081542
EST:     TAAGCTTTTCTGAATGTGGAGGGATTGAAATTGATGAGAATTGGGATAAG                         GTCAAGACTGTATTTATGCCAACA
genomic: TAAGCTTTTCTGAATGTGGAGGGATTGAAATTGAGGAGAATTGGGATAAGgtgccaaaat ... catatttcagGTCAAGACTGTATTTATGCCAACA
EST: gi|6963952|gb|AW432645.1|AW432645
EST:     TAAGCTTTTCTGAATGTGGAGGGATTGAAATTGAGGAGAATTGGGATAAG                         GTCAAGACTGTATTTATGCCAACAGGAGTGTCTCTTACATCAGAGAGTATT
genomic: TAAGCTTTTCTGAATGTGGAGGGATTGAAATTGAGGAGAATTGGGATAAGgtgccaaaat ... catatttcagGTCAAGACTGTATTTATGCCAACAGGAGTGTCTCTTACATCAGAGAGTATT
EST: gi|7587940|gb|AW703746.1|AW703746
EST:     TAAGCTNTTCTGAATGTGGAGGGATTGAAATTGAGGAGAATTGGGATAAG                         GTCAAGACTGTATTTATGCCAACAGGAGTGTCTCTTACATCAGAGAGTATT
genomic: TAAGCTTTTCTGAATGTGGAGGGATTGAAATTGAGGAGAATTGGGATAAGgtgccaaaat ... catatttcagGTCAAGACTGTATTTATGCCAACAGGAGTGTCTCTTACATCAGAGAGTATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gctcatatttcctcgtaattcccataagttacaaagtgttttgttcatatttcagGTCAAGACTGTATTTATGCCAACAGGAGTGTCTCTTACATCAGAGAGTATTGCCCCACTTGTTGCAACACTTCCCTTAGAG
                                      ttttgttc  CT-rich tract
                                      ttttgttcatattt  TA-rich tract