Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagctttagtatataatcaaaattagctcttgattatttgtagtgtgttaataagtgtcattgctctaacttctcaatacaatgactttttgttcagGGAGTCCTGAAAGGTTTTGATCAGGCAACAAATATAATTCTTGATGAGTCCCATGAACGAGTTTATTCTACCAAG

Basic information

species Glycine max
transcript GLYMA15G40590.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G40590.1 (Glycine max), 3'ss of exon 3
lower sequence: AT1G65700.1 (Arabidopsis thaliana), 3'ss of exon 3
gtaagctttagtatataat-caaaattagctcttgattatttgtagtgtgttaataagtgtcattgctctaacttctcaatacaatgactttttgttcagGGAGTCCTGAAAGGTTTTGATCAGGCAACAAATATAATTCTTGATGAGTCCCATGAACGAGTTTATTCTACCAAG
||| | | || | | |  |   | ||  | | | ||  | |  |  |||      |||| || | |    ||    || ||    | |  |||| |||||||||| || ||||||||||| ||||| ||||||||||| |||||||| || |||||||| || | ||| || |||
gtatgttatactctcttgtgtgatatctggtttaga--actccttatgtcaatgcaagtatcttagta--aagagatcgattt--ttatatttt-ttcagGGAGTTCTTAAAGGTTTTGACCAGGCTACAAATATAATCCTTGATGAATCTCATGAACGTGTGTTTTCCACAAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151399825|gb|EV269696.1|EV269696
EST:     AGACAATTTCAGTCATTACAAATGATGGACGAAATATAGTG                         GGAGTCCTGAAAGGTTTTGATCAGGCAACAAATATAATTCTTGATGAGTCC
genomic: AGACAATTTCAGTCATTACAAATGATGGACGAAATATAGTGgtaagcttta ... ttttgttcagGGAGTCCTGAAAGGTTTTGATCAGGCAACAAATATAATTCTTGATGAGTCC
EST: gi|213598025|gb|DB972213.1|DB972213
EST:     AGACAATTTCAGTCATTACAAATGATGGACGAAATATAGTG                         GGAGTCCTGAAAGGTTTTGATCAGGCAACAAATATAATTCTTGATGAGTCC
genomic: AGACAATTTCAGTCATTACAAATGATGGACGAAATATAGTGgtaagcttta ... ttttgttcagGGAGTCCTGAAAGGTTTTGATCAGGCAACAAATATAATTCTTGATGAGTCC
EST: gi|192300038|gb|FG992191.1|FG992191
EST:     GTAGATCAGACAATTTCAGTCATTACAAATGATGGACGAAATATAGTG                         GGAGTCCTGAAAGGTTTTGATCAGGCAACAAATATAATTCTTGATGAGTCC
genomic: GTAGATCAGACAATTTCAGTCATTACAAATGATGGACGAAATATAGTGgtaagcttta ... ttttgttcagGGAGTCCTGAAAGGTTTTGATCAGGCAACAAATATAATTCTTGATGAGTCC
EST: gi|193496721|gb|FK460305.1|FK460305
EST:     AGACAATTTCAGTCATTACAAATGATGGACGAAATATAGTG                         GGAGTCCTGAAAGGTTTTGATCAGGCAACAAATATAATTCTTGATGAGTCC
genomic: AGACAATTTCAGTCATTACAAATGATGGACGAAATATAGTGgtaagcttta ... ttttgttcagGGAGTCCTGAAAGGTTTTGATCAGGCAACAAATATAATTCTTGATGAGTCC
EST: gi|192300037|gb|FG992190.1|FG992190
EST:     AGACAATTTCAGTCATTACAAATGATGGACGAAATATAGTG                         GGAGTCCTGAAAGGTTTTGATCAGGCAACAAATATAATTCTTGATGAGTCC
genomic: AGACAATTTCAGTCATTACAAATGATGGACGAAATATAGTGgtaagcttta ... ttttgttcagGGAGTCCTGAAAGGTTTTGATCAGGCAACAAATATAATTCTTGATGAGTCC
EST: gi|151395293|gb|EV265164.1|EV265164
EST:     AGACAATTTCAGTCATTACAAATGATGGACGAAATATAGTG                         GGAGTCCTGAAAGGTTTTGATCAGGCAACAAATATAATTCTTGATGAGTCC
genomic: AGACAATTTCAGTCATTACAAATGATGGACGAAATATAGTGgtaagcttta ... ttttgttcagGGAGTCCTGAAAGGTTTTGATCAGGCAACAAATATAATTCTTGATGAGTCC
EST: gi|192310890|gb|FG998894.1|FG998894
EST:     TTGTAGATCAGACAATTTCAGTCATTACAAATGATGGACGAAATATAGTG                         GGAGTCCTGAAAGGTTTTGATCAGGCAACAAATATAATTCTTGATGAGTCC
genomic: TTGTAGATCAGACAATTTCAGTCATTACAAATGATGGACGAAATATAGTGgtaagcttta ... ttttgttcagGGAGTCCTGAAAGGTTTTGATCAGGCAACAAATATAATTCTTGATGAGTCC
EST: gi|192310889|gb|FG998893.1|FG998893
EST:     AGACAATTTCAGTCATTACAAATGATGGACGAAATATAGTG                         GGAGTCCTGAAAGGTTTTGATCAGGCAACAAATATAATTCTTGATGAGTCC
genomic: AGACAATTTCAGTCATTACAAATGATGGACGAAATATAGTGgtaagcttta ... ttttgttcagGGAGTCCTGAAAGGTTTTGATCAGGCAACAAATATAATTCTTGATGAGTCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgtgttaataagtgtcattgctctaacttctcaatacaatgactttttgttcagGGAGTCCTGAAAGGTTTTGATCAGGCAACAAATATAATTCTTGATGAGTCCCATGAACGAGTTTATTCTACCAAG
                     ctctaac  putative branch site (score: 2)
                                           ctttttgttc  putative PPT
     ttaataagt  TA-rich tract