1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtatataaccaacttgatgacattttcatgtataatactatttgttttgaattactatttcattgtcatttttttaagaatataattgatctcatgttccctaattatctatgcagATTTTAAGCCCAATAGACAAACCTTAATATCATCAACCAACAAGCCATTGACACATAATGGCATCGAACCAAGGGCACTAAGGACAGATGAAATTCCTCA
species | Glycine max |
transcript | GLYMA15G35410.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGGTATATTCTTCTGTCAGATTCTTCATACTGGAAGGGTTTCAGATCCAG ATTTTAAGCCCAATAGACAAACCTTAATATCATCAACCAACAAGCCATTGAEST: gi|192314881|gb|FK010699.1|FK010699
genomic: TGGTATATTCTTCTGTCAGATTCTTCATACTGGAAGGGTTTCAGATCCAGgtatataacc ... atctatgcagATTTTAAGCCCAATAGACAAACCTTAATATCATCAACCAACAAGCCATTGA
EST: TGGTATATTCTTCTGTCAGATTCTTCATACTGGAAGGGTTTCAGATCCAG ATTTTAAGCCCAATAGACAAACCTTAATATCATCAACCAACAAGCCATTGAEST: gi|41146332|gb|CK606543.1|CK606543
genomic: TGGTATATTCTTCTGTCAGATTCTTCATACTGGAAGGGTTTCAGATCCAGgtatataacc ... atctatgcagATTTTAAGCCCAATAGACAAACCTTAATATCATCAACCAACAAGCCATTGA
EST: TTCAGATCCAG A-TTTAAGCCCAATAGACAAA-CTTTATATCATCAACCAACAAGCCATTGAEST: gi|151401485|gb|EV271299.1|EV271299
genomic: TTCAGATCCAGgtatataacc ... atctatgcagATTTTAAGCCCAATAGACAAACCTTAATATCATCAACCAACAAGCCATTGA
EST: TGGTATATTCTTCTGTCAGATTCTTCATACTGGAAGGGTTTCAGATCCAG ATTTTAAGCCCAATAGACAAACCTTAATATCATCAACCAACAAGCCATTGA
genomic: TGGTATATTCTTCTGTCAGATTCTTCATACTGGAAGGGTTTCAGATCCAGgtatataacc ... atctatgcagATTTTAAGCCCAATAGACAAACCTTAATATCATCAACCAACAAGCCATTGA
attgtcatttttttaagaatataattgatctcatgttccctaattatctatgcagATTTTAAGCCCAATAGACAAACCTTAATATCATCAACCAACAAGCCATTGACACATAATGGCATCGAACCAAGGGCACTAAGGACAGATGAAATTCCTCA
ccctaat putative branch site (score: 3)
atttttttaagaatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatataaccaacttgatgacattttcatgtataatactatttgttttgaattactatttcattgtcatttttttaagaatataattgatctcatgttccctaattatctatgcagATTTTAAGCCCAATAGACAAACCTTAATATCATCAACCAACAAGCCATTGACACATAATGGCATCGAACCAAGGGCACTAAGGACAGATGAAATTCCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG