1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtacattattttttgtggaaacatttcgcaaggggataaatgatttaccttttctccacatatatatatatatatatatatatatatatatatatatatatatatatatatgtattaatttagcgatgataatagtaataatatacataatttgttgtttttccaaacagATGTACCCGAATGGAAAGATGTCCCACCATTTTAGACAAATGAAGGAAGGTGATTACTTGGCCGTGAGGGGCCCCAAG
species | Glycine max |
transcript | GLYMA15G34620.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTCCAATCACGTTGGATTCAGATATTGGCTACTTCGAGTTGGTTGTGAAG ATGTACCCGAATGGAAAGATGTCCCACCATTTTAGACAAATGAAGGAAGGTEST: gi|151411830|gb|EV281641.1|EV281641
genomic: CTCCAATCACGTTGGATTCAGATATTGGCTACTTCGAGTTGGTTGTGAAGgtacattatt ... ttccaaacagATGTACCCGAATGGAAAGATGTCCCACCATTTTAGACAAATGAAGGAAGGT
EST: CTCCAATCACGTTGGATTCAGATATTGGCTACTTCGAGTTGGTTGTGAAG ATGTACCCGAATGGAAAGATGTCCCACCATTTTAGACAAATGAAGGAAGGTEST: gi|4291233|gb|AI441732.1|AI441732
genomic: CTCCAATCACGTTGGATTCAGATATTGGCTACTTCGAGTTGGTTGTGAAGgtacattatt ... ttccaaacagATGTACCCGAATGGAAAGATGTCCCACCATTTTAGACAAATGAAGGAAGGT
EST: CTCCAATCACGTTGGATTCAGATATTGGCTACTTCGAGTTGGTTGTGAAG ATGTACCCGAATGGAAAGATGTCCCACCATTTTAGACAAATGAAGGAAGGT
genomic: CTCCAATCACGTTGGATTCAGATATTGGCTACTTCGAGTTGGTTGTGAAGgtacattatt ... ttccaaacagATGTACCCGAATGGAAAGATGTCCCACCATTTTAGACAAATGAAGGAAGGT
taatttagcgatgataatagtaataatatacataatttgttgtttttccaaacagATGTACCCGAATGGAAAGATGTCCCACCATTTTAGACAAATGAAGGAAGGTGATTACTTGGCCGTGAGGGGCCCCAAG
tattaat putative branch site (score: 2)
tttgttgtttttcc putative PPT
atgataatagtaataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacattattttttgtggaaacatttcgcaaggggataaatgatttaccttttctccacatatatatatatatatatatatatatatatatatatatatatatatatatatgtattaatttagcgatgataatagtaataatatacataatttgttgtttttccaaacagATGTACCCGAATGGAAAGATGTCCCACCATTTTAGACAAATGAAGGAAGGTGATTACTTGGCCGTGAGGGGCCCCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA