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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttaaccacatacaccatgggaaagagaaaattattgtgtgaaagattttgcacataacatttttatatgatatagtttgtgatctttctatccatcgcagGAAATTATTGATATGTGTGATTATTGTGTTGGGCTAAGCAGACAATTGAATGGATCAATTATACCATCAGAAC

Basic information

species Glycine max
transcript GLYMA15G19670.3
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G19670.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv11s0016g00900.t01 (Vitis vinifera), 3'ss of exon 3
--ttaaccacatacaccatgggaaagagaaaattattgtgtgaaagattttgcacataacatttttatatgatatagtttgtgatctttc-tatccatcgcagGAAATTATTGATATGTGTGATTATTGTGTTGGGCTAAGCAGACAATTGAATGGATCAATTATACCATCAGAAC
    ||  || |  |  ||     |||  || || | |  |     |  || | |    |||||| | || |     ||| | || |||  | | | | |||||||||| |||||||||||||||||  ||||||| ||||  ||||| | |||||||| || ||||| || ||||
atacaaaaacctcaataatctttcagatgaatttttggccttgtttacctttctcc---cattttcaaataactccattttttattttttatttgctttgcagGAAATTGTTGATATGTGTGATTATGCTGTTGGGTTAAGTCGACAAATAAATGGATCCATCATACCTTCTGAAC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192311334|gb|FK003791.1|FK003791
EST:     TGTCTCTTGAGATGGGAAAAATTCTCCCAGAAGGAATTGGGGAAGTTCAG                         GAAATTATTGATATGTGTGATTATTGTGTTGGGCTAAGCAGACAATTGAAT
genomic: TGTCTCTTGAGATGGGAAAAATTCTCCCAGAAGGAATTGGGGAAGTTCAGgtatcacaat ... tccatcgcagGAAATTATTGATATGTGTGATTATTGTGTTGGGCTAAGCAGACAATTGAAT
EST: gi|298176954|gb|HO026961.1|HO026961
EST:     TGTCTCTTGAGATGGGAAAAATTCTCCCAGAAGGAATTGGGGAAGTTCAG                         GAAATTATTGATATGTGTGATTATTGTGTTGGGCTAAGCAGACAATTGAAT
genomic: TGTCTCTTGAGATGGGAAAAATTCTCCCAGAAGGAATTGGGGAAGTTCAGgtatcacaat ... tccatcgcagGAAATTATTGATATGTGTGATTATTGTGTTGGGCTAAGCAGACAATTGAAT
EST: gi|208138184|gb|GD936818.1|GD936818
EST:     TGTCTCTTGAGATGGGAAAAATTCTCCCAGAAGGAATTGGGGAAGTTCAG                         GAAATTATTGATATGTGTGATTATTGTGTTGGGCTAAGC
genomic: TGTCTCTTGAGATGGGAAAAATTCTCCCAGAAGGAATTGGGGAAGTTCAGgtatcacaat ... tccatcgcagGAAATTATTGATATGTGTGATTATTGTGTTGGGCTAAGC
EST: gi|254315873|gb|GR825682.1|GR825682
EST:     TGTCTCTTGAGATGGGAAAAATTCTCCCAGAAGGAATTGGGGAAGTTCAG                         GAAATTATTGATATGTGTGATTATTGTGTTGGGCTAAGCAGACAATTGAAT
genomic: TGTCTCTTGAGATGGGAAAAATTCTCCCAGAAGGAATTGGGGAAGTTCAGgtatcacaat ... tccatcgcagGAAATTATTGATATGTGTGATTATTGTGTTGGGCTAAGCAGACAATTGAAT
EST: gi|193695881|gb|FK635655.1|FK635655
EST:     TGTCTCTTGAGATGGGAAAAATTCNCCCAGAAGGAAT-GGGGAAGTTCAG                         GAAATTATTGATATGTGTGATTATTGTGTTGGGCTAAGCAGACAAT
genomic: TGTCTCTTGAGATGGGAAAAATTCTCCCAGAAGGAATTGGGGAAGTTCAGgtatcacaat ... tccatcgcagGAAATTATTGATATGTGTGATTATTGTGTTGGGCTAAGCAGACAAT
EST: gi|192296158|gb|FG989743.1|FG989743
EST:     TGTCTCTTGAGATGGGAAAAATTCTCCCAGAAGGAATTGGGGAAGTTCAG                         GAAATTATTGATATGTGTGATTATTGTGTTGGGCTAAGCAGGCAATTGAAT
genomic: TGTCTCTTGAGATGGGAAAAATTCTCCCAGAAGGAATTGGGGAAGTTCAGgtatcacaat ... tccatcgcagGAAATTATTGATATGTGTGATTATTGTGTTGGGCTAAGCAGACAATTGAAT
EST: gi|192311335|gb|FK003792.1|FK003792
EST:     TGTCTCTTGAGATGGGAAAAATTCTCCCAGAAGGAATTGGGGAAGTTCAG                         GAAATTATTGATATGTGTGATTATTGTGTTGGGCTAAGCAGACAATTGAAT
genomic: TGTCTCTTGAGATGGGAAAAATTCTCCCAGAAGGAATTGGGGAAGTTCAGgtatcacaat ... tccatcgcagGAAATTATTGATATGTGTGATTATTGTGTTGGGCTAAGCAGACAATTGAAT
EST: gi|151412062|gb|EV281874.1|EV281874
EST:     TGTCTCTTGAGATGGGAAAAATTCTCCCAGAAGGAATTGGGGAAGTTCAG                         GAAATTATTGATATGTGTGATTATTGTGTTGGGCTAAGCAGACAATTGAAT
genomic: TGTCTCTTGAGATGGGAAAAATTCTCCCAGAAGGAATTGGGGAAGTTCAGgtatcacaat ... tccatcgcagGAAATTATTGATATGTGTGATTATTGTGTTGGGCTAAGCAGACAATTGAAT
EST: gi|15813460|gb|BI785735.1|BI785735
EST:     TGTCTCTTGAGATGGGAAAAATTCTCCCAGAAGGAATTGGGGAAGTTCAG                         GAAATTATTGATATGTGTGATTATTGTGTTGGGCTAAGCAGACAATTGAAT
genomic: TGTCTCTTGAGATGGGAAAAATTCTCCCAGAAGGAATTGGGGAAGTTCAGgtatcacaat ... tccatcgcagGAAATTATTGATATGTGTGATTATTGTGTTGGGCTAAGCAGACAATTGAAT
EST: gi|27446368|gb|CA953491.1|CA953491
EST:     TGTCTCTTGAGATGGGAAAAATTCTCCCAGAAGGAATTGGGGAAGTTCAG                         GAAATTATTGATATGTGTGATTATTGTGTTGGGCTAAGCAGACAATTGAAT
genomic: TGTCTCTTGAGATGGGAAAAATTCTCCCAGAAGGAATTGGGGAAGTTCAGgtatcacaat ... tccatcgcagGAAATTATTGATATGTGTGATTATTGTGTTGGGCTAAGCAGACAATTGAAT
EST: gi|254317668|gb|GR826652.1|GR826652
EST:     TGTCTCTTGAGATGGGAAAAATTCTCCCAGAAGGAATTGGGGAAGTTCAG                         GAAATTATTGATATGTGTGATTATTGTGTTGGGCTAAGCAGACAATTGAAT
genomic: TGTCTCTTGAGATGGGAAAAATTCTCCCAGAAGGAATTGGGGAAGTTCAGgtatcacaat ... tccatcgcagGAAATTATTGATATGTGTGATTATTGTGTTGGGCTAAGCAGACAATTGAAT
EST: gi|209718196|gb|BW657828.1|BW657828
EST:     TGTCTCTTGAGATGGGAAAAATTCTCCCAGAAGGAATTGGGGAAGTTCAG                         GAAATTATTGATATGTGTGATTATTGTGTTGGGCTAAGCAGACAATTGAAT
genomic: TGTCTCTTGAGATGGGAAAAATTCTCCCAGAAGGAATTGGGGAAGTTCAGgtatcacaat ... tccatcgcagGAAATTATTGATATGTGTGATTATTGTGTTGGGCTAAGCAGACAATTGAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttgcacataacatttttatatgatatagtttgtgatctttctatccatcgcagGAAATTATTGATATGTGTGATTATTGTGTTGGGCTAAGCAGACAATTGAATGGATCAATTATACCATCAGAAC
      acataac  putative branch site (score: 3)
                                     tctttctatccatc  putative PPT
      acataacatttttata  TA-rich tract