1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtagatttaactttctttatgtcctctattacttttttaattttgtttttcaaaccaagagttattttgtattttatcgtgatgacaattgtattttttgttatttgttatgtttttattggactgtgaaatttcattttttattggtatcaatctttaactatacatttaaacttgtttgatttgtgttttagGTTTTGAGAAGCCATCAGCTATTCAGCAGAGAGGAATAGTTCCTTTCTGCAAGGGACTTGATGTTATACAACAGGCCCAGTCTGGAACTGGGAAGACAGC
species | Glycine max |
transcript | GLYMA15G18760.3 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGATGCTATGGGCTTGCAAGAGAATCTCCTGAGAGGCATTTATGCATATG GTTTTGAGAAGCCATCAGCTATTCAGCAGAGAGGAATAGTTCCTTTCTGCAEST: gi|208237128|gb|GE035136.1|GE035136
genomic: TGATGCTATGGGCTTGCAAGAGAATCTCCTGAGAGGCATTTATGCATATGgtagatttaa ... tgtgttttagGTTTTGAGAAGCCATCAGCTATTCAGCAGAGAGGAATAGTTCCTTTCTGCA
EST: AGAATCTCCTGAGAGGCATTTATGCATATG GTTTTGAGAAGCCATCAGCTATTCAGCAGAGAGGAATAGTTCCTTTCTGCAEST: gi|15814355|gb|BI786630.1|BI786630
genomic: AGAATCTCCTGAGAGGCATTTATGCATATGgtagatttaa ... tgtgttttagGTTTTGAGAAGCCATCAGCTATTCAGCAGAGAGGAATAGTTCCTTTCTGCA
EST: TGATGCTATGGGCTTGCAAGAGAATCTCCTGAGAGGCATTTATGCATATG GTTTTGAGAAGCCATCAGCTATTCAGCAGAGAGGAATAGTTCCTTTCTGCAEST: gi|6666365|gb|AW277824.1|AW277824
genomic: TGATGCTATGGGCTTGCAAGAGAATCTCCTGAGAGGCATTTATGCATATGgtagatttaa ... tgtgttttagGTTTTGAGAAGCCATCAGCTATTCAGCAGAGAGGAATAGTTCCTTTCTGCA
EST: TGATGCTATGGGCTTGCAAGAGAATCTCCTGAGAGGCATTTATGCATATG GTTTTGAGAAGCCATCAGCTATTCAGCAGAGAGGAATAGTTCCTTTCTGCAEST: gi|192295033|gb|FG986752.1|FG986752
genomic: TGATGCTATGGGCTTGCAAGAGAATCTCCTGAGAGGCATTTATGCATATGgtagatttaa ... tgtgttttagGTTTTGAGAAGCCATCAGCTATTCAGCAGAGAGGAATAGTTCCTTTCTGCA
EST: TGATGCTATGGGCTTGCAAGACAATCTCCTGAGAGGCATTTATGCATATG GTTTTGAGAAGCCAEST: gi|209712728|gb|BW681582.1|BW681582
genomic: TGATGCTATGGGCTTGCAAGAGAATCTCCTGAGAGGCATTTATGCATATGgtagatttaa ... tgtgttttagGTTTTGAGAAGCCA
EST: TGATGCTATGGGCTTGCAGGAGAATCTCCTGAGAGGCATTTATGCATATG GTTTTGAGAAGCCATCAGCTATTCAGCAGAGAGGAATAGTTCCTTTCTGCAEST: gi|213591344|gb|DB959886.1|DB959886
genomic: TGATGCTATGGGCTTGCAAGAGAATCTCCTGAGAGGCATTTATGCATATGgtagatttaa ... tgtgttttagGTTTTGAGAAGCCATCAGCTATTCAGCAGAGAGGAATAGTTCCTTTCTGCA
EST: TGATGCTATGGGCTTGCAGGAGAATCTCCTGAGAGGCATTTATGCATATG GTTTTGAGAAGCCATCAGCTATTCAGCAGAGAGGAATAGTTCCTTTCTGCAEST: gi|207825765|gb|GD798582.1|GD798582
genomic: TGATGCTATGGGCTTGCAAGAGAATCTCCTGAGAGGCATTTATGCATATGgtagatttaa ... tgtgttttagGTTTTGAGAAGCCATCAGCTATTCAGCAGAGAGGAATAGTTCCTTTCTGCA
EST: AGAATCTCCTGAGAGGCATTTATGCATANG GTTTTGAGAAGCCATCAGCTATTCAGCAGAGAGGAATAGTTCCTTTCTGCAEST: gi|208275593|gb|GE077793.1|GE077793
genomic: AGAATCTCCTGAGAGGCATTTATGCATATGgtagatttaa ... tgtgttttagGTTTTGAGAAGCCATCAGCTATTCAGCAGAGAGGAATAGTTCCTTTCTGCA
EST: AGAATCTCCTGAGAGGCATTTATGCATATG GTTTTGAGAAGCCATCAGCTATTCAGCAGAGAGGAATAGTTCCTTTCTGCA
genomic: AGAATCTCCTGAGAGGCATTTATGCATATGgtagatttaa ... tgtgttttagGTTTTGAGAAGCCATCAGCTATTCAGCAGAGAGGAATAGTTCCTTTCTGCA
tttattggtatcaatctttaactatacatttaaacttgtttgatttgtgttttagGTTTTGAGAAGCCATCAGCTATTCAGCAGAGAGGAATAGTTCCTTTCTGCAAGGGACTTGATGTTATACAACAGGCCCAGTCTGGAACTGGGAAGACAGC
aatctttaactataca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagatttaactttctttatgtcctctattacttttttaattttgtttttcaaaccaagagttattttgtattttatcgtgatgacaattgtattttttgttatttgttatgtttttattggactgtgaaatttcattttttattggtatcaatctttaactatacatttaaacttgtttgatttgtgttttagGTTTTGAGAAGCCATCAGCTATTCAGCAGAGAGGAATAGTTCCTTTCTGCAAGGGACTTGATGTTATACAACAGGCCCAGTCTGGAACTGGGAAGACAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA