1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tgttatatcggacaactgtggcattgcccttatatgaaggttttatgctataatgttttatgaactggggatcctctttgaaaacttgtcttctatacagCTCGGAAACAAGTGACAGAACTAGACAAGAGATACCTGACCCTGTTGCTGGATTTGGTGAACCTGCTGATCCTCCAACTCA
species | Glycine max |
transcript | GLYMA15G17840.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATTTTGTCCAAATTAGATGGTTCTGCTAAAGCCAGCTCATCAAGTAGAAG CTCGGAAACAAGTGACAGAACTAGACAAGAGATACCTGACCCTGTTGCTGGEST: gi|23728829|gb|BU762478.1|BU762478
genomic: ATTTTGTCCAAATTAGATGGTTCTGCTAAAGCCAGCTCATCAAGTAGAAGgtgaatttgg ... ttctatacagCTCGGAAACAAGTGACAGAACTAGACAAGAGATACCTGACCCTGTTGCTGG
EST: ATTTTGTCCAAATTAGATGGTTCTGCTAAAGCCAGCTCATCAAGTAGAAG CTCGGAAACAAGTGACAGAACTAGACAAGAGCTACCTGACCCTGTTGCTGGEST: gi|151408833|gb|EV278641.1|EV278641
genomic: ATTTTGTCCAAATTAGATGGTTCTGCTAAAGCCAGCTCATCAAGTAGAAGgtgaatttgg ... ttctatacagCTCGGAAACAAGTGACAGAACTAGACAAGAGATACCTGACCCTGTTGCTGG
EST: ATTTTGTCCAAATTAGATGGTTCTGCTAAAGCCAGCTCATCAAGTAGAAG CTCGGAAACAAGTGACAGAACTAGACAAGAGATACCTGACCCTGTTGCTGGEST: gi|15204141|gb|BI426909.1|BI426909
genomic: ATTTTGTCCAAATTAGATGGTTCTGCTAAAGCCAGCTCATCAAGTAGAAGgtgaatttgg ... ttctatacagCTCGGAAACAAGTGACAGAACTAGACAAGAGATACCTGACCCTGTTGCTGG
EST: ATTTTGTCCAAATTAGATGGTTCTGCTAAAGCCAGCTCATCAAGTAGAAG CTCGGAAACAAGTGACAGAACTAGACAAGAGCTACCTGACCCTGTTGCTGGEST: gi|151401061|gb|EV270875.1|EV270875
genomic: ATTTTGTCCAAATTAGATGGTTCTGCTAAAGCCAGCTCATCAAGTAGAAGgtgaatttgg ... ttctatacagCTCGGAAACAAGTGACAGAACTAGACAAGAGATACCTGACCCTGTTGCTGG
EST: ATTTTGTCCAAATTAGATGGTTCTGCTATAGCCAGCTCATCAAGTAGAAG CTCGGAAACAAGTGACAGAACTAGACAAGAGATACCTGACCCTGTTGCTGGEST: gi|15813617|gb|BI785892.1|BI785892
genomic: ATTTTGTCCAAATTAGATGGTTCTGCTAAAGCCAGCTCATCAAGTAGAAGgtgaatttgg ... ttctatacagCTCGGAAACAAGTGACAGAACTAGACAAGAGATACCTGACCCTGTTGCTGG
EST: ATTTTGTCCAAATTAGATGGTTCTGCTAAAGCCAGCTCATCAAGTAGAAG CTCGGAAACAAGTGACAGAACTAGACAAGAGATACCTGACCCTGTTGCTGGEST: gi|33389848|gb|CA853055.1|CA853055
genomic: ATTTTGTCCAAATTAGATGGTTCTGCTAAAGCCAGCTCATCAAGTAGAAGgtgaatttgg ... ttctatacagCTCGGAAACAAGTGACAGAACTAGACAAGAGATACCTGACCCTGTTGCTGG
EST: ATTTTGTCCAAATTAGATGGTTCTGCTAAAGCCAGCTCATCAAGTAGAAG CTCGGAAACAAGTGACAGAACTAGACAAGAGATACCTGACCCTGTTGCTGGEST: gi|24135432|gb|BU925942.1|BU925942
genomic: ATTTTGTCCAAATTAGATGGTTCTGCTAAAGCCAGCTCATCAAGTAGAAGgtgaatttgg ... ttctatacagCTCGGAAACAAGTGACAGAACTAGACAAGAGATACCTGACCCTGTTGCTGG
EST: ATTTTGTCCAAATTAGATGGTTCTGCTAAAGCCAGCTCATCAAGTAGAAG CTCGGAAACAAGTGACAGAACTAGACAAGAGCTACCTGACCCTGTTGCTGGEST: gi|192300523|gb|FG991505.1|FG991505
genomic: ATTTTGTCCAAATTAGATGGTTCTGCTAAAGCCAGCTCATCAAGTAGAAGgtgaatttgg ... ttctatacagCTCGGAAACAAGTGACAGAACTAGACAAGAGATACCTGACCCTGTTGCTGG
EST: ATTTTGTCCAAATTAGATGGTTCTGCTAAAGCCAGCTCATCAAGTAGAAG CTCGGAAACAAGTGACAGAACTAGACAAGAGATACCTGACCCTGTTGCTGG
genomic: ATTTTGTCCAAATTAGATGGTTCTGCTAAAGCCAGCTCATCAAGTAGAAGgtgaatttgg ... ttctatacagCTCGGAAACAAGTGACAGAACTAGACAAGAGATACCTGACCCTGTTGCTGG
tgctataatgttttatgaactggggatcctctttgaaaacttgtcttctatacagCTCGGAAACAAGTGACAGAACTAGACAAGAGATACCTGACCCTGTTGCTGGATTTGGTGAACCTGCTGATCCTCCAACTCA
cttgtcttct CT-rich tract
taatgttttatgaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgttatatcggacaactgtggcattgcccttatatgaaggttttatgctataatgttttatgaactggggatcctctttgaaaacttgtcttctatacagCTCGGAAACAAGTGACAGAACTAGACAAGAGATACCTGACCCTGTTGCTGGATTTGGTGAACCTGCTGATCCTCCAACTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - actgtgg
- - - - - - - - - - -cattgcc
- - - - - - - - - - - - - - - - tatgaag
- - - - - - - - - - - - - - - - - - - - -tttatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - tatgaac