1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...acagggaaaaacagggaattcgccaatttcaagttcagtgtgtgttggtttttgttaacttgagttctggagctaatgttttctgaggatgaatttgcagATTCCAGATTTTATCAAGAGGGAGGTTGAGTTTCGGTTTCTTGCT
species | Glycine max |
transcript | GLYMA15G16320.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GTGAAGGAGAAACTCTTGTGGTGACAGTCTTTGAGATTAGAAAATCGGAG ATTCCAGATTTTATCAAGAGGGAGGTTGAGTTTCGGTTTCTTGCTEST: gi|31307340|gb|CD392543.1|CD392543
genomic: GTGAAGGAGAAACTCTTGTGGTGACAGTCTTTGAGATTAGAAAATCGGAGgtatagtcct ... gaatttgcagATTCCAGATTTTATCAAGAGGGAGGTTGAGTTTCGGTTTCTTGCT
EST: GTGAAGGAGAAACTCTTGTGGTAACAGTCTTTGAGATTAGAAAATCGGAG ATTCCAGATTTTATCAAGAGGGAGGTTGAGTTTCGGTTTCTTGCTEST: gi|14991401|gb|BI317074.1|BI317074
genomic: GTGAAGGAGAAACTCTTGTGGTGACAGTCTTTGAGATTAGAAAATCGGAGgtatagtcct ... gaatttgcagATTCCAGATTTTATCAAGAGGGAGGTTGAGTTTCGGTTTCTTGCT
EST: GTGAAGGAGAAACTCTTGTGGTAACAGTCTTTGAGATTAGAAAATCGGAG ATTCCAGATTTTATCAAGAGGGAGGTTGAGTTTCGGTTTCTTGCTEST: gi|20207814|gb|BQ133903.1|BQ133903
genomic: GTGAAGGAGAAACTCTTGTGGTGACAGTCTTTGAGATTAGAAAATCGGAGgtatagtcct ... gaatttgcagATTCCAGATTTTATCAAGAGGGAGGTTGAGTTTCGGTTTCTTGCT
EST: GTGAAGGAGAAACTCTTGTGGTGACAGTCTTTGAGATTAGAAAATCGGAG ATTCCAGATTTTATCAAGAGGGAGGTTGAGTTTCGGTTTCTTGCT
genomic: GTGAAGGAGAAACTCTTGTGGTGACAGTCTTTGAGATTAGAAAATCGGAGgtatagtcct ... gaatttgcagATTCCAGATTTTATCAAGAGGGAGGTTGAGTTTCGGTTTCTTGCT
tggtttttgttaacttgagttctggagctaatgttttctgaggatgaatttgcagATTCCAGATTTTATCAAGAGGGAGGTTGAGTTTCGGTTTCTTGCT
taatgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acagggaaaaacagggaattcgccaatttcaagttcagtgtgtgttggtttttgttaacttgagttctggagctaatgttttctgaggatgaatttgcagATTCCAGATTTTATCAAGAGGGAGGTTGAGTTTCGGTTTCTTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - aaaaaca
- - - - - - - - - - - - - - - - - - -gtgtgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gttctgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gctaatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttctgag