Skip to another splice site:
1  
 5'  3'   
2  
 5'  3'   
3  
 5'  3'   
4  
 5'  3'   
5  
 5'  3'   
6  
 5'  3'   
7  
 5'  3'   
8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttgggcctgtagctttgactgtttatgttatgcctgtggactgtgatatttttctcacttcctaattaaaatatattctgtttcaaaatatgcagGAGCTTGAAAAGAGTGGATCTGCAGCTCTTCGCAACAATATTGTGGTCATAATGGCAGACTTTTGTGTCCGGTTCACTGCTCTTGTTGATTG

Basic information

species Glycine max
transcript GLYMA15G15920.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G15920.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv05s0020g01160.t01 (Vitis vinifera), 3'ss of exon 3
--------------------------------------------------------------------------------------------gttgggcctgtagctttgactgtttatgttatgcctgtggactgtgatatttttctcacttcctaattaaaatatattctgttt-caaaatatgca------------gGAGCTTGAAAAGAGTGGATCTGCAGCTCTTCGCAACAATATTGTGGTCATAATGGCAGACTTTTGTGTCCGGTTCACTGCTCTTGTTGATTG
| ||||| | || |||| |||| | | | | | || ||| | | ||| || | ||| || | ||||| ||| ||||| ||||||| | |||||| || |||||||||||||| || | | ||||||| ||||||||||||| ||||||| | ||||||||
gtttggttttcaacctggtgtggcttctgtatttcctttttgttttttccttgtgcattgccctttctaacaatttttcctgtgaattatcactgaaacctgtttgctcaacc--ttattttattttatttgcttctatttgcttgatcaacttgctgtaaaagtagtctgagttcacacaccatgcatgcattgttccagGAACTTGAGAAGAGTGACTGTGCAGCCCTCCGCAACAATATTGTAGTTACATTGGCAGATTTTTGTGTCCGGTACACTGCTTTAGTTGATTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgtgatatttttctcacttcctaattaaaatatattctgtttcaaaatatgcagGAGCTTGAAAAGAGTGGATCTGCAGCTCTTCGCAACAATATTGTGGTCATAATGGCAGACTTTTGTGTCCGGTTCACTGCTCTTGTTGATTG
                   tcctaat  putative branch site (score: 2)
 taattaaaatatattc  TA-rich tract