Sequence
atgc intronic sequence ATGC exonic sequencegttttgctctattccctgcattggaagttttagtgtagtgtagtgtagatgggatttgttgtgttgattggttctttgtttgtttggttagTTTGAGGCTGCGTGGGCTCTCACGAACATTGCATCTGGAACTTCTGAGAATACCAAGGTGGTGATTGATCATGGGGCGGTGCCGATATTTGTCAAACTAC
Basic information
| species | Glycine max |
| transcript | GLYMA15G15480.1 |
| intron # | 3 |
| splice site | 3' |
| intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA15G15480.1 (Glycine max), 3'ss of exon 3
lower sequence: LOC_Os01g14950.1 (Oryza sativa), 3'ss of exon 3
--gttttgctctattccctgcattggaagttttagtgtagtgtagtgtagatgggatttgttgtgttgattggttctttgtttgtttggttagTTTGAGGCTGCGTGGGCTCTCACGAACATTGCATCTGGAACTTCTGAGAATACCAAGGTGGTGATTGATCATGGGGCGGTGCCGATATTTGTCAAACTAC
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gtgtgtgccaacacaatattattttcattatctggtaggttcaaataaaaatgg-atttattactgtggt-gcttttgaattaaattttgtagTTCGAAGCTGCGTGGGCACTTACAAACATTGCATCTGGCACTTCGGAGAATACAAAGGTTGTCATTGATCATGGGGCTGTACCAATATTTGTGAAGCTTC
upper sequence: GLYMA15G15480.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G091119_T02 (Zea mays), 3'ss of exon 3
gttttgctctattccctgcat-tggaagttttagtgtagtgtagtgtagatgggatttgttgtgttgattggttctttgtttgtttggttagTTTGAGGCTGCGTGGGCTCTCACGAACATTGCATCTGGAACTTCTGAGAATACCAAGGTGGTGATTGATCATGGGGCGGTGCCGATATTTGTCAAACTAC
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------gtatgttgatttaatataaaccttatatcctgttgttgc-tggatgaaaatgaatttctc-atcagctttgtaattcttttgt-agTTCGAAGCAGCATGGGCTCTCACAAATATTGCTTCTGGCACTTCAGAAAATACAAAGGTTGTTATTGATCATGGGGCTGTTCCTATATTTGTGAAGCTTC
upper sequence: GLYMA15G15480.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G088231_T01 (Zea mays), 3'ss of exon 3
------------gttttgctctattccctgcattggaagttttagtgtagtgtagtgtagatgggatttgttgtgttgattggttctttgtttgtttggttagTTTGAGGCTGCGTGGGCTCTCACGAACATTGCATCTGGAACTTCTGAGAATACCAAGGTGGTGATTGATCATGGGGCGGTGCCGATATTTGTCAAACTAC
|||| | | | | || | | ||| | | |||| | | | | | || | | | | || ||| || ||||||| || || ||||||||||| || ||||| ||||| ||||| || ||||| |||| || ||||| |||||||| || || |||||||| || || |
tttggcgcttaaaaggtgcttaagcgattttttagtaaccatgaccccgttgtcgc-tggatgaaaatgaatttctc-atgagctttataattcttttgt-agTTTGAAGCCGCATGGGCTCTCACAAATATTGCTTCTGGCACTTCAGAAAATACAAAGGCTGTTATTGACCATGGGGCTGTTCCTATATTTGTGAAGCTTC
upper sequence: GLYMA15G15480.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv05s0077g01430.t01 (Vitis vinifera), 3'ss of exon 3
gttttgctctattccctg---cattggaagtt--ttagt-gtagtgtagt-gtagatgggatttgttgtgttgattggttctttgtttgtttggttagTTTGAGGCTGCGTGGGCTCTCACGAACATTGCATCTGGAACTTCTGAGAATACCAAGGTGGTGATTGATCATGGGGCGGTGCCGATATTTGTCAAACTAC
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gtttgggattgttctttgttacattgttgtttggttattagcagttttgtagtttgtttaagtacttatttcaataatggcttcaatt--ttgtctagTTTGAGGCAGCTTGGGCTCTCACAAACATTGCTTCTGGGACATCAGAAAATACCAAGGTGGTAATTGATCATGGAGCAGTGCCAATATTTGTGAAGCTACMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|209698698|gb|BW660699.1|BW660699EST: TGCCTCGGTTTGTGGAGTTTCTTGTTAGGGAGGATTTTCCTCAACTACAG TTTGAGGCTGCGTGGGCTCTCACGAACATT
genomic: TGCCTCGGTTTGTGGAGTTTCTTGTTAGGGAGGATTTTCCTCAACTACAGgttttgctct ... gtttggttagTTTGAGGCTGCGTGGGCTCTCACGAACATT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.agtgtagtgtagatgggatttgttgtgttgattggttctttgtttgtttggttagTTTGAGGCTGCGTGGGCTCTCACGAACATTGCATCTGGAACTTCTGAGAATACCAAGGTGGTGATTGATCATGGGGCGGTGCCGATATTTGTCAAACTAC
tgttgat putative branch site (score: 4)
ttctttgtttgttt putative PPT
atttgtt TA-rich tract
