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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgacaggttattgccttcggaaattgaattgtttgtttatcagccaaggcttggattgggaccagaaagatcaaatttcggttttgacattttttgttcactgccttgcgtgcgaatccgtgcagGGTCCTCAAAAAGTGAAAGTTGTCTCTTCCAACAATGTGGTGACTGCCAAAGACATCATCATTGCCACTGGTTCAGTTCCTTTTGTTCCAAAGGGCATTG

Basic information

species Glycine max
transcript GLYMA15G15310.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G15310.1 (Glycine max), 3'ss of exon 3
lower sequence: LOC_Os05g06460.1 (Oryza sativa), 3'ss of exon 3
gtaagtgacaggttattgccttcggaaattgaattgtttgtttatcagccaaggcttggattgggaccagaaagatcaaatttcggttttgacattttttgttcactgccttgcgtgcgaatccgtgcagGGTCCTCAAAAAGTGAAAGTTGTCTCTTCCAACAATGTGGTGACTGCCAAAGACATCATCATTGCCACTGGTTCAGTTCCTTTTGTTCCAAAGGGCATTG
                |  |||  |  |   |||   |     |  | |  |     | | |  |||   | |||   | |  ||   || |  | ||    |||     |     | |||      ||       |   | |  |||||||  | | |  |||| |   | ||||| |   | ||||||||||| ||||| ||||||||||||||||| |         
----------------tatcttgtggtagaaaatgcatacaggaatatctcatctgcgaaatatgacataatagag-gattgccgacattaatctattcctatcatgatttgatcagGGAAA----ACAAAAGGTACGGTATGGAAAAGTTGGTTTTCCAGACAAAGAAATCACTGCAAGGAATATCATCATTGCTACTGGATCAGTTCCTTTTGTTCCCA---------

upper sequence: GLYMA15G15310.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G073774_T01 (Zea mays), 3'ss of exon 3
gtaagtgacaggttattgccttcggaaattgaattgtttgtttatcagc-caaggcttggattgggaccagaaagatcaaatttcggttttgacattttttgttcactgccttgcgtgcgaatccgtgcagGGTCCTCAAAAAGTGAAAGTTGTCTCTTCCAACAATGTGGTGACTGCCAAAGACATCATCATTGCCACTGGTTCAGTTCCTTTTGTTCCAAAGGGCATTG
                     |  | ||    ||   || |  || |     |    ||   |      ||  | |  || |    ||| | |||  ||||      || | ||  |  | |     |||       | | | |  |||| ||  |   |  | || |   | |||||||   ||||||| || |||||||||||||||||||||||||| |         
-----------------attatgtgtaaccagatc--ttatccatgaatgtgaaaaatgagctctctgtagttatacaaattgcatgttctaacacgttttcactgatgtcctgactagGGA---AAGCAAAAGGTACGATATGGAAAAGCTGGTTTCCCAGATAAAGAAATCACTGCCAGGAACATCATAATCGCCACTGGTTCAGTTCCTTTTGTTCCGA---------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13562493|gb|BG550713.1|BG550713
EST:     TTCTCACTGGTTTTGGAACTATTTTA                         GGTCCTCAAAAAGTGAAAGTTGTCTCTTCCAACAATGTGGTGACTGCCAAA
genomic: TTCTCACTGGTTTTGGAACTATTTTAgtaagtgaca ... atccgtgcagGGTCCTCAAAAAGTGAAAGTTGTCTCTTCCAACAATGTGGTGACTGCCAAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcaaatttcggttttgacattttttgttcactgccttgcgtgcgaatccgtgcagGGTCCTCAAAAAGTGAAAGTTGTCTCTTCCAACAATGTGGTGACTGCCAAAGACATCATCATTGCCACTGGTTCAGTTCCTTTTGTTCCAAAGGGCATTG
           ttttgac  putative branch site (score: 3)
           ttttgacatttttt  TA-rich tract