1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tataaagtttcttttcatgttcattcttctgtcccattttaaaagctactatttcagctgccaactcaaactgtttcccttttgcctcttttcttcttagAAATCAGCTGGAGAAGAACTTCTTGAGCAGGTGATTCCTTTTAAGTTTGTGGAGGTGGATGAGGAACAGTCTAGACTTGTTCTCAGTCACCGCAAAGCTG
species | Glycine max |
transcript | GLYMA15G14550.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTCAAGTGGAAGGCCTTAAGGGGTTTGTTCCATTTTCACAGATATCATCG AAATCAGCTGGAGAAGAACTTCTTGAGCATGTGATTCCTTTTAAGTTTGTAEST: gi|18730522|gb|BM525924.1|BM525924
genomic: CTCAAGTGGAAGGCCTTAAGGGGTTTGTTCCATTTTCACAGATATCATCGgttagctctt ... ttcttcttagAAATCAGCTGGAGAAGAACTTCTTGAGCAGGTGATTCCTTTTAAGTTTGTG
EST: CTCAAGTGGAAGGCCTTAAGGGGTTTGTTCCATTTTCACAGATATCATCG AAATCAGCTGGAGAAGAACTTCTTGAGCAGGTGATTCCTTTTAAGTTTGTGEST: gi|192319699|gb|FK011851.1|FK011851
genomic: CTCAAGTGGAAGGCCTTAAGGGGTTTGTTCCATTTTCACAGATATCATCGgttagctctt ... ttcttcttagAAATCAGCTGGAGAAGAACTTCTTGAGCAGGTGATTCCTTTTAAGTTTGTG
EST: CTCAAGTGGAAGGCCTTAAGGGGTTTGTTCCATTTTCACAGATATCATCG AAATCAGCTGGAGAAGAACTTCTTGAGCATGTGATTCCTTTTAAGTTTGTAEST: gi|18732823|gb|BM527270.1|BM527270
genomic: CTCAAGTGGAAGGCCTTAAGGGGTTTGTTCCATTTTCACAGATATCATCGgttagctctt ... ttcttcttagAAATCAGCTGGAGAAGAACTTCTTGAGCAGGTGATTCCTTTTAAGTTTGTG
EST: TCAAGTGGAAGGAGCTTAAGGGGTTTGTTCCATTTTCACAGATATCATCG AAATCAGCTGGAGAAGAACTTCTTGAGCATGTGATTCCTTTTAAGTTTGTAEST: gi|17153911|gb|BM143844.1|BM143844
genomic: TCAAGTGGAAGG-CCTTAAGGGGTTTGTTCCATTTTCACAGATATCATCGgttagctctt ... ttcttcttagAAATCAGCTGGAGAAGAACTTCTTGAGCAGGTGATTCCTTTTAAGTTTGTG
EST: CTCAAGTGGAAGGCCTTAAGGGGTTTGTTCCATTTTCACAGATATCATCG AAATCAGCTGGAGAAGAACTTCTTGAGCATGTGATTCCTTTTAAGTTTGTAEST: gi|26269049|gb|CA820112.1|CA820112
genomic: CTCAAGTGGAAGGCCTTAAGGGGTTTGTTCCATTTTCACAGATATCATCGgttagctctt ... ttcttcttagAAATCAGCTGGAGAAGAACTTCTTGAGCAGGTGATTCCTTTTAAGTTTGTG
EST: CTCAAGTGGAAGGCCTTAAGGGGTTTGTTCCATTTTCACAGATATCATCG AAATCAGCTGGAGAAGAACTTCTTGAGCATGTGATTCCTTTTAAGTTTGTA
genomic: CTCAAGTGGAAGGCCTTAAGGGGTTTGTTCCATTTTCACAGATATCATCGgttagctctt ... ttcttcttagAAATCAGCTGGAGAAGAACTTCTTGAGCAGGTGATTCCTTTTAAGTTTGTG
ctactatttcagctgccaactcaaactgtttcccttttgcctcttttcttcttagAAATCAGCTGGAGAAGAACTTCTTGAGCAGGTGATTCCTTTTAAGTTTGTGGAGGTGGATGAGGAACAGTCTAGACTTGTTCTCAGTCACCGCAAAGCTG
ctcaaactgtttccct CT-rich tract
ttttctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tataaagtttcttttcatgttcattcttctgtcccattttaaaagctactatttcagctgccaactcaaactgtttcccttttgcctcttttcttcttagAAATCAGCTGGAGAAGAACTTCTTGAGCAGGTGATTCCTTTTAAGTTTGTGGAGGTGGATGAGGAACAGTCTAGACTTGTTCTCAGTCACCGCAAAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - -catgttc
- - - - - - - - - - - - - - -tgtccca
- - - - - - - - - - - - - - - - - - - - - - gctacta
- - - - - - - - - - - - - - - - - - - - - - - - - - -tcagctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccaactc