1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ttcatgtaaaattgtgaaataaagtgcgattatcttgttttgagcttatgtttcttacaaatacaaggcagttgattatatagttatctatacaatacagAAACAACATTGAACAAAGTGGAGAAATCATCTTTAATGCTTGCATATGAGGTTAATGCAGTGGGTCCTATCTTAGTTATCAAG
species | Glycine max |
transcript | GLYMA15G14360.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TCTCATTAATGCGTCTGGGATTCTTTCAATACCTGAAGTAATACATCCAG AAACAACATTGAACAAAGTGGAGAAATCATCTTTAATGCTTGCATATGAGGEST: gi|151402001|gb|EV271814.1|EV271814
genomic: TCTCATTAATGCGTCTGGGATTCTTTCAATACCTGAAGTAATACATCCAGgtaaaagttt ... tacaatacagAAACAACATTGAACAAAGTGGAGAAATCATCTTTAATGCTTGCATATGAGG
EST: TCTCATTAATGCGTCTGGGATTCTTTCAATACCTGAAGTAATACATCCAG AAACAACATTGAACAAAGTGGAGAAATCATCTTTAATGCTTGCATATGAGGEST: gi|26058943|gb|CA801857.1|CA801857
genomic: TCTCATTAATGCGTCTGGGATTCTTTCAATACCTGAAGTAATACATCCAGgtaaaagttt ... tacaatacagAAACAACATTGAACAAAGTGGAGAAATCATCTTTAATGCTTGCATATGAGG
EST: TCTCATTAATGCGTCTGGGATTCTTTCAATACCTGAAGTAATACATCCAG AAACAACATTGAACAAAGTGGAGAAATCATCTTTAATGCTTGCATATGAGGEST: gi|192318880|gb|FK011452.1|FK011452
genomic: TCTCATTAATGCGTCTGGGATTCTTTCAATACCTGAAGTAATACATCCAGgtaaaagttt ... tacaatacagAAACAACATTGAACAAAGTGGAGAAATCATCTTTAATGCTTGCATATGAGG
EST: TCTCATTAATGCGTCTGGGATTCTTTCAATACCTGAAGTAATACATCCAG AAACAACATTGAACAAAGTGGAGAAATCATCTTTAATGCTTGCATATGAGGEST: gi|192311710|gb|FK003137.1|FK003137
genomic: TCTCATTAATGCGTCTGGGATTCTTTCAATACCTGAAGTAATACATCCAGgtaaaagttt ... tacaatacagAAACAACATTGAACAAAGTGGAGAAATCATCTTTAATGCTTGCATATGAGG
EST: TCTCATTAATGCGTCTGGGATTCTTTCAATACCTGAAGTAATACATCCAG AAACAACATTGAACAAAGTGGAGAAATCATCTTTAATGCTTGCATATGAGG
genomic: TCTCATTAATGCGTCTGGGATTCTTTCAATACCTGAAGTAATACATCCAGgtaaaagttt ... tacaatacagAAACAACATTGAACAAAGTGGAGAAATCATCTTTAATGCTTGCATATGAGG
ttatgtttcttacaaatacaaggcagttgattatatagttatctatacaatacagAAACAACATTGAACAAAGTGGAGAAATCATCTTTAATGCTTGCATATGAGGTTAATGCAGTGGGTCCTATCTTAGTTATCAAG
attatatagttatcta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttcatgtaaaattgtgaaataaagtgcgattatcttgttttgagcttatgtttcttacaaatacaaggcagttgattatatagttatctatacaatacagAAACAACATTGAACAAAGTGGAGAAATCATCTTTAATGCTTGCATATGAGGTTAATGCAGTGGGTCCTATCTTAGTTATCAAG
- catgtaa
- - - - - - - - aaataaa
- - - - - - - - - - - - - - - - - -tgttttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aatacaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcagttg