1 5' 3' | 2 5' 3' | 3 5' 3' |
...cttggaaagttgtttttccttgttcaaccttaaaggggaatgaaaattatattgttggaatttttgtgtttgttgacacggatgtttttattgctcacagGAGCTGGAGAAGAAGAGAAAGGAGAAGGCAGAGTTGGTTTATGCGAGAAAGAAACAACTCAACAAATTAAGGGTGAAAGCTGAAAAGGTTGCTGAAGAGA
species | Glycine max |
transcript | GLYMA15G13670.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGGGCAGGTTGTCACCTGAAGTTGGATGGAGCTACTATGATACCATTAGG GAGCTGGAGAAGAAGAGAAAGGAGAAGGCAGAGTTGGTTTATGCGAGAAAGEST: gi|254343697|gb|GR857453.1|GR857453
genomic: TGGGCAGGTTGTCACCTGAAGTTGGATGGAGCTACTATGATACCATTAGGgtaagttctt ... ttgctcacagGAGCTGGAGAAGAAGAGAAAGGAGAAGGCAGAGTTGGTTTATGCGAGAAAG
EST: TGGGCAGGTTGTCACCTGAAGTTGGATGGAGCTACTATGATACCATTAGG GAGCTGGAGAAGAAGAGAAAGGAGAAGGCAGAGTTGGTTTATGCGAGAAAGEST: gi|16347249|gb|BI972844.1|BI972844
genomic: TGGGCAGGTTGTCACCTGAAGTTGGATGGAGCTACTATGATACCATTAGGgtaagttctt ... ttgctcacagGAGCTGGAGAAGAAGAGAAAGGAGAAGGCAGAGTTGGTTTATGCGAGAAAG
EST: TGGGCAGGTTGTCACCTGAAGTTGGATGGAGCTACTATGATACCATTAGG GAGCTGGAGAAGAAAAGAAAGGAGAAGGCAGAGTTGGTTTATGCCAGAAAGEST: gi|207817623|gb|GD791432.1|GD791432
genomic: TGGGCAGGTTGTCACCTGAAGTTGGATGGAGCTACTATGATACCATTAGGgtaagttctt ... ttgctcacagGAGCTGGAGAAGAAGAGAAAGGAGAAGGCAGAGTTGGTTTATGCGAGAAAG
EST: TGGGCAGGTTGTCACCTGAAGTTGGATGGAGCTACTATGATACCATTAGG GAGCTGGAGAAGAAGAGAAAGGAGAAGGCAGAGTTGGTTTATGCGAGAAAAEST: gi|298166806|gb|HO010245.1|HO010245
genomic: TGGGCAGGTTGTCACCTGAAGTTGGATGGAGCTACTATGATACCATTAGGgtaagttctt ... ttgctcacagGAGCTGGAGAAGAAGAGAAAGGAGAAGGCAGAGTTGGTTTATGCGAGAAA-
EST: TGGGCAGGTTGTCATCTGAAGTTGGATGGAGCTACTATGATACCATTAGG GAGCTGGAGAAGAAGAGEST: gi|298168781|gb|HO009711.1|HO009711
genomic: TGGGCAGGTTGTCACCTGAAGTTGGATGGAGCTACTATGATACCATTAGGgtaagttctt ... ttgctcacagGAGCTGGAGAAGAAGAG
EST: TGGGCAGGTTGTCATCTGAAGTTGGATGGAGCTACTATGATACCATTAGG GAGCTGGAGAAGAAGAGAAAGGGGAAGGCAGAGTTGGTTTATGCCAGAAEST: gi|207716287|gb|GD698909.1|GD698909
genomic: TGGGCAGGTTGTCACCTGAAGTTGGATGGAGCTACTATGATACCATTAGGgtaagttctt ... ttgctcacagGAGCTGGAGAAGAAGAGAAAGGAGAAGGCAGAGTTGGTTTATGCGAGAA
EST: TCACCTGAAGTTGGATGGAGCTACTATGATACCATTAGG GAGCTGGAGAAGAAGAGAAAGGAGAAGGCAGAGTTGGTTTATGCGAGAAAGEST: gi|24205749|gb|BU965002.1|BU965002
genomic: TCACCTGAAGTTGGATGGAGCTACTATGATACCATTAGGgtaagttctt ... ttgctcacagGAGCTGGAGAAGAAGAGAAAGGAGAAGGCAGAGTTGGTTTATGCGAGAAAG
EST: TGGGCAGGTTGTCATCTGAAGTTGGATGGAGCTACTATGATACCATTAGG GAGCTGGAGAAGAAGAGAAAGGGGAAGGCAGAGTTGGTTTATGCCAGAAAGEST: gi|16348184|gb|BI973779.1|BI973779
genomic: TGGGCAGGTTGTCACCTGAAGTTGGATGGAGCTACTATGATACCATTAGGgtaagttctt ... ttgctcacagGAGCTGGAGAAGAAGAGAAAGGAGAAGGCAGAGTTGGTTTATGCGAGAAAG
EST: TGGGCAGGTTGTCACCTGAAGTTGGATGGAGCTACTATGATACCATTAGG GAGCTGGAGAAGAAGAGAAAGGAGAAGGCAGAGTTGGTTTATGCGAGAAAGEST: gi|254343696|gb|GR857452.1|GR857452
genomic: TGGGCAGGTTGTCACCTGAAGTTGGATGGAGCTACTATGATACCATTAGGgtaagttctt ... ttgctcacagGAGCTGGAGAAGAAGAGAAAGGAGAAGGCAGAGTTGGTTTATGCGAGAAAG
EST: TGGGCAGGTTGTCACCTGAAGTTGGATGGAGCTACTATGATACCATTAGG GAGCTGGAGAAGAAGAGAAAGGAGAAGGCAGAGTTGGTTTATGCGAGAAAG
genomic: TGGGCAGGTTGTCACCTGAAGTTGGATGGAGCTACTATGATACCATTAGGgtaagttctt ... ttgctcacagGAGCTGGAGAAGAAGAGAAAGGAGAAGGCAGAGTTGGTTTATGCGAGAAAG
attatattgttggaatttttgtgtttgttgacacggatgtttttattgctcacagGAGCTGGAGAAGAAGAGAAAGGAGAAGGCAGAGTTGGTTTATGCGAGAAAGAAACAACTCAACAAATTAAGGGTGAAAGCTGAAAAGGTTGCTGAAGAGA
tgttgac putative branch site (score: 3)
tttttatt putative PPT
atgtttttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttggaaagttgtttttccttgttcaaccttaaaggggaatgaaaattatattgttggaatttttgtgtttgttgacacggatgtttttattgctcacagGAGCTGGAGAAGAAGAGAAAGGAGAAGGCAGAGTTGGTTTATGCGAGAAAGAAACAACTCAACAAATTAAGGGTGAAAGCTGAAAAGGTTGCTGAAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - -ttccttg
- - - - - - - - - - - - caacctt
- - - - - - - - - - - - - - - - - - ggaatga
- - - - - - - - - - - - - - - - - - - - - - - - - -ttgttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttgac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggatgtt