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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atttttaccgacaaatgcacctgttctctttctttgttgtatgtacattagaactcactattgccttgctttctttttcttttttaattataactctcagGATGACACTGCTTTCGAGAAACAGAGTGCTCTTTTTGCTTTGGCAATATCAGATATTGTTCTGATAAACAT

Basic information

species Glycine max
transcript GLYMA15G13380.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G13380.2 (Glycine max), 3'ss of exon 3
lower sequence: Vv10s0116g00810.t01 (Vitis vinifera), 3'ss of exon 2
atttttaccgacaaatgcacctgttctctttctttgttgt-atgtacattagaactcactattgccttgctttctttttcttttttaattataactct--cagGATGACACTGCTTTCGAGAAACAGAGTGCTCTTTTTGCTTTGGCAATATCAGATATTGTTCTGATAAACAT
|| | ||   ||  ||  ||| |||    |  |  ||| | || |   ||   | |  || ||   |  | | |||  | |     |||  |  || |  |||||||| ||||| || |||||||| |||||  | |||||||||||||||||||| ||||| |||||||||||
atgtgta---acttatttaccggttgaaatggtgagttttcatttgagttcttaatttctgttttgtctcatgcttcctgtggcaaaatcttgtctattccagGATGATACTGCATTTGAGAAACAAAGTGCCTTGTTTGCTTTGGCAATATCAGACATTGTGCTGATAAACAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|11689067|gb|BF596743.1|BF596743
EST:     GCACAATTGCTATGGATTTAGAGGGTACTGATGGAAGAGAGAGAGGCGAG                         GATGACACTGCTTTCGAGAAACAGAGTGCTCTTTTTGCTTTGGCAATATCA
genomic: GCACAATTGCTATGGATTTAGAGGGTACTGATGGAAGAGAGAGAGGCGAGgtaatctata ... taactctcagGATGACACTGCTTTCGAGAAACAGAGTGCTCTTTTTGCTTTGGCAATATCA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cattagaactcactattgccttgctttctttttcttttttaattataactctcagGATGACACTGCTTTCGAGAAACAGAGTGCTCTTTTTGCTTTGGCAATATCAGATATTGTTCTGATAAACAT
                                          ttataac  putative branch site (score: 2)
                  ccttgctttctttttc  CT-rich tract
                    ttgctttctttttctt  TA-rich tract