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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttgtaatcttatattaacaatttatctatgtttcgtgttcaagggtgttttcaatctatcactattaacacagtagtccttgatgattttactgccttttcccctccagAGGCAATGTAGACAAGAAGGAAGCACTAGAGAACTTGGATCTCATTCTATTGTGCATTGATGAAATTGTTGATGGCGG

Basic information

species Glycine max
transcript GLYMA15G13190.3
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G13190.3 (Glycine max), 3'ss of exon 3
lower sequence: LOC_Os05g38610.1 (Oryza sativa), 3'ss of exon 3
gttgtaatct-tatattaacaatttatctatgtttc-gtgttcaagggtgttttcaatctatcactattaacacagtagtccttgatgattttactgccttttcccctccagAGGCAATGTAGACAAGAAGGAAGCACTAGAGAACTTGGATCTCATTCTATTGTGCATTGATGAAATTGTTGATGGCGG
||| || ||    |||| |   | | | | | ||||    ||  |   ||||||  || |||  |  |  ||    | |    |  |   ||| | |  |  ||   | ||||   || || ||||| |    |||||| || ||  |||||||||| ||||||||| | ||||||||||||||||| ||
gttatactcaacctatttaatgtatctttgtttttctaccttttattttgttttacatttatgtccct--acctgattgcatgtattctgtttcccgtgtcatcggtttcagAAATAACGTCGACAAAAGAACAGCACTCGAAAATCTGGATCTCATCCTATTGTGCCTCGATGAAATTGTTGATGGAGG

upper sequence: GLYMA15G13190.3 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G431350_T01 (Zea mays), 3'ss of exon 3
gttgtaatct-tatattaacaatttatctatgtttcgtgttcaagggtgttttcaatctatcactattaacacag-tagtccttga-tgattttactgccttttcccctccagAGGCAATGTAGACAAGAAGGAAGCACTAGAGAACTTGGATCTCATTCTATTGTGCATTGATGAAATTGTTGATGGCGG
||| |  ||  | |||||| | ||||||| ||   |   |     | | | ||  || |     | ||||  | | | ||   ||| ||  ||| |   |||      | ||||  ||  || ||||| | |  |||||| ||||| |||||| | || ||||||||| ||||||||||||||||||| ||
gttattttccctctattaa-actttatctttgcaaccactgttttgttctgttacatgttgttgtgttaatgctgattgtatatgaatgtgtttccaatcttggtggtttcagAAACATGGTTGACAAAAGGACAGCACTCGAGAATTTGGATATGATCCTATTGTGCCTTGATGAAATTGTTGATGGAGG

upper sequence: GLYMA15G13190.3 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM5G883149_T03 (Zea mays), 3'ss of exon 3
gttgtaatct-tatattaacaatttatctatgtttcgtgttcaagggtgttttcaatctatcactattaacacag-tagtccttga-tgattttactgccttttcccctccagAGGCAATGTAGACAAGAAGGAAGCACTAGAGAACTTGGATCTCATTCTATTGTGCATTGATGAAATTGTTGATGGCGG
||| |  ||  | |||| | | ||||||| |    |   |    |     || ||   |||   | ||||  | | | ||   ||| ||  ||| |  ||||      | |||   ||  || ||||| | |  |||||| ||||| ||||| || || ||||||||  ||||||||||||||||||| ||
gttatcttccctctattga-agtttatcttttcaaccattgtttgttctgttacatgttattg-tgttaatgctgattgtatatgaatgtgtttccaaccttggtggtttcagGAACATGGTTGACAAAAGGACAGCACTCGAGAATTTGGACCTGATCCTATTGTGTCTTGATGAAATTGTTGATGGAGG

upper sequence: GLYMA15G13190.3 (Glycine max), 3'ss of exon 3
lower sequence: Vv10s0003g02760.t01 (Vitis vinifera), 3'ss of exon 4
gttgtaatcttatattaacaatttatctatgtttcgtgttcaagggtgttttcaatctatcactattaacacagtagtccttgatgattt-tactgccttttcc--cctccagAGGCAATGTAGACAAGAAGGAAGCACTAGAGAACTTGGATCTCATTCTATTGTGCATTGATGAAATTGTTGATGGCGG
  | |  |   | | |||   ||  | |  |     | || |  |  |||   |   |    ||| ||| |    || | ||| |   |  |  |||||   |   | ||||| |||||||| ||||||||||| ||||| |||||||||||| | ||||| || ||| ||||||||||| ||||||||||
-gtatctttcaagaataattgttactattagcaatctcttaattgaggttcagatgttgatgctagtaatatgtgagcctttgttatctaattttgcctgcccttgcttccagGGGCAATGTGGACAAGAAGGAGGCACTTGAGAACTTGGATTTAATTCTTTTATGCCTTGATGAAATTATTGATGGCGG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298178201|gb|HO023936.1|HO023936
EST:     TTAGCCACGGTTCTGCAGGCATTTTTTGGTTCTGTGGGCCTTCTGCTCAG                         AGGCAATGTAGACAAGAAGGAAGCACTAGAGAACTTGGATCTCATTCTATT
genomic: TTAGCCACAGTTCTGCAGGCATTTTTTGATTCTGTGGGCCTTCTGCTCAGgttgtaatct ... tcccctccagAGGCAATGTAGACAAGAAGGAAGCACTAGAGAACTTGGATCTCATTCTATT
EST: gi|298190231|gb|HO032352.1|HO032352
EST:     TTAGCCACAGTTCTGCAGGCATTTTTTGATTCTGTGGGCCTTCTGCTCAG                         AGGCAATGTAGACAAGAAGGAAGCACTAGAGAACTTGGACCTCATTCTATT
genomic: TTAGCCACAGTTCTGCAGGCATTTTTTGATTCTGTGGGCCTTCTGCTCAGgttgtaatct ... tcccctccagAGGCAATGTAGACAAGAAGGAAGCACTAGAGAACTTGGATCTCATTCTATT
EST: gi|151408791|gb|EV278599.1|EV278599
EST:     TTAGCCACAGTTCTGCAGGCATTTTTTGATTCTGTGGGCCTTCTGCTCAG                         AGGCAATGTAGACAAGAAGGAAGCACTAGAGAACTTGGATCTCATTCTATT
genomic: TTAGCCACAGTTCTGCAGGCATTTTTTGATTCTGTGGGCCTTCTGCTCAGgttgtaatct ... tcccctccagAGGCAATGTAGACAAGAAGGAAGCACTAGAGAACTTGGATCTCATTCTATT
EST: gi|192325778|gb|FK018000.1|FK018000
EST:     TTAGCCACAGTTCTGCAGGCATTTTTTGATTCTGTGGGCCTTCTGCTCAG                         AGGCAATGTAGACAAGAAGGAAGCACTAGAGAACTTGGATCTCATTCTATT
genomic: TTAGCCACAGTTCTGCAGGCATTTTTTGATTCTGTGGGCCTTCTGCTCAGgttgtaatct ... tcccctccagAGGCAATGTAGACAAGAAGGAAGCACTAGAGAACTTGGATCTCATTCTATT
EST: gi|41145498|gb|CK605709.1|CK605709
EST:     TTACCCACAGTTCTGCAGGCATTTTTTGATTCTGTGGGCCTTCTGCTCAG                         AGGCAATGTAGACAAGAAGGAAGCACTAGAGAACTTGGATCTCATTCTATT
genomic: TTAGCCACAGTTCTGCAGGCATTTTTTGATTCTGTGGGCCTTCTGCTCAGgttgtaatct ... tcccctccagAGGCAATGTAGACAAGAAGGAAGCACTAGAGAACTTGGATCTCATTCTATT
EST: gi|58014334|gb|CX701076.1|CX701076
EST:     TTAGCCACAGTTCTGCAGGCATTTTTTGATTCTGTGGGCCTTCTGCTCAG                         AGGCAATGTAGACAAGAAGGAAGCACTAGAGAACTTGGATCTCATTCTATT
genomic: TTAGCCACAGTTCTGCAGGCATTTTTTGATTCTGTGGGCCTTCTGCTCAGgttgtaatct ... tcccctccagAGGCAATGTAGACAAGAAGGAAGCACTAGAGAACTTGGATCTCATTCTATT
EST: gi|151408109|gb|EV277917.1|EV277917
EST:     TTAGCCACAGTTCTGCAGGCATTTTTTGATTCTGTGGGCCTTCTGCTCAG                         AGGCAATGTAGACAAGAAGGAAGCACTAGAGAACTTGGATCTCATTCTATT
genomic: TTAGCCACAGTTCTGCAGGCATTTTTTGATTCTGTGGGCCTTCTGCTCAGgttgtaatct ... tcccctccagAGGCAATGTAGACAAGAAGGAAGCACTAGAGAACTTGGATCTCATTCTATT
EST: gi|192294109|gb|FG986198.1|FG986198
EST:     TTAGCCACAGTTCTGCAGGCATTTTTTGATTCTGTGGGCCTTCTGCTCAG                         AGGCAATGTAGACAAGAAGGAAGCACTAGAGAACTTGGATCTCATTCTATT
genomic: TTAGCCACAGTTCTGCAGGCATTTTTTGATTCTGTGGGCCTTCTGCTCAGgttgtaatct ... tcccctccagAGGCAATGTAGACAAGAAGGAAGCACTAGAGAACTTGGATCTCATTCTATT
EST: gi|298194358|gb|HO041006.1|HO041006
EST:     TTAGCCACAGTTCTGCAGGCATTTTTTGATTCTGTGGGCCTTCTGCTCAG                         AGGCAATGTAGACAAGAAGGAAGCACTAGAGAACTTGGATCTCATTCTATT
genomic: TTAGCCACAGTTCTGCAGGCATTTTTTGATTCTGTGGGCCTTCTGCTCAGgttgtaatct ... tcccctccagAGGCAATGTAGACAAGAAGGAAGCACTAGAGAACTTGGATCTCATTCTATT
EST: gi|209704906|gb|BW661709.1|BW661709
EST:     TTAGCCACAGTTCTGCAGGCATTTTTTGATTCTGTGGGCCTTCTGCTCAG                         AGGCAATGTAGACAAGAAGGAAGCACTAGAGAACTTGGATCTCATTCTATT
genomic: TTAGCCACAGTTCTGCAGGCATTTTTTGATTCTGTGGGCCTTCTGCTCAGgttgtaatct ... tcccctccagAGGCAATGTAGACAAGAAGGAAGCACTAGAGAACTTGGATCTCATTCTATT
EST: gi|8402161|gb|BE057795.1|BE057795
EST:     TTAGCCACAGTTCTGCAGGCATTTTTTGATTCTGTGGGCCTTCTGCTCAG                         AGGCAATGTAGACAAGAAGGAAGCACTAGAGAACTTGGATCTCATTCTATT
genomic: TTAGCCACAGTTCTGCAGGCATTTTTTGATTCTGTGGGCCTTCTGCTCAGgttgtaatct ... tcccctccagAGGCAATGTAGACAAGAAGGAAGCACTAGAGAACTTGGATCTCATTCTATT
EST: gi|58017732|gb|CX704474.1|CX704474
EST:     TTAGCCACAGTTCTGCAGGCATTTTTTGATTCTGTGGGCCTTCTGCTCAG                         AGGCAATGTAGACAAGAAGGAAGCACTAGAGAACTTGGATCTCATTCTATT
genomic: TTAGCCACAGTTCTGCAGGCATTTTTTGATTCTGTGGGCCTTCTGCTCAGgttgtaatct ... tcccctccagAGGCAATGTAGACAAGAAGGAAGCACTAGAGAACTTGGATCTCATTCTATT
EST: gi|23729019|gb|BU762586.1|BU762586
EST:     GTTCTGCAGGCATTTTTTGATTCTGTGGGCCTTCTGCTCAG                         AGGCAATGTAGACAAGAAGGAAGCACTAGAGAACTTGGATCTCATTCTATT
genomic: GTTCTGCAGGCATTTTTTGATTCTGTGGGCCTTCTGCTCAGgttgtaatct ... tcccctccagAGGCAATGTAGACAAGAAGGAAGCACTAGAGAACTTGGATCTCATTCTATT
EST: gi|14258489|gb|BG881397.1|BG881397
EST:     TTAGCCACAGTTCTGCAGGCATTTTTTGATTCTGTGGGCCTTCTGCTCAG                         AGGCAATGTAGACAAGAAAGAAGCACTAGAGAACTTGGATCTCATTCTATT
genomic: TTAGCCACAGTTCTGCAGGCATTTTTTGATTCTGTGGGCCTTCTGCTCAGgttgtaatct ... tcccctccagAGGCAATGTAGACAAGAAGGAAGCACTAGAGAACTTGGATCTCATTCTATT
EST: gi|5057863|gb|AI736339.1|AI736339
EST:     TTAGCCACAGTTCTGCAGGCATTTTTTGATTCTGTGGGCCTTCTGCTCAG                         AGGCAATGTAGACAAGAAGGAAGCACTAGAGAACTTGGATCTCATTCTATT
genomic: TTAGCCACAGTTCTGCAGGCATTTTTTGATTCTGTGGGCCTTCTGCTCAGgttgtaatct ... tcccctccagAGGCAATGTAGACAAGAAGGAAGCACTAGAGAACTTGGATCTCATTCTATT
EST: gi|298175562|gb|HO018273.1|HO018273
EST:     TTAGCCACAGTTCTGCAGGCATTTTTTGATTCTGTGGGCCTTCTGCTCAG                         AGGCAATGTAGACAAGAAGGAAGCACTAGAGAACTTGGATCTCATTCTATT
genomic: TTAGCCACAGTTCTGCAGGCATTTTTTGATTCTGTGGGCCTTCTGCTCAGgttgtaatct ... tcccctccagAGGCAATGTAGACAAGAAGGAAGCACTAGAGAACTTGGATCTCATTCTATT
EST: gi|298175469|gb|HO015102.1|HO015102
EST:     TTAGCCACAGTTCTGCAGGCATTTTTTGATTCTGTGGGCCTTCTGCTCAG                         AGGCAATGTAGACAAGAAGGAAGCACTAGAGAACTTGGATCTCATTCTATT
genomic: TTAGCCACAGTTCTGCAGGCATTTTTTGATTCTGTGGGCCTTCTGCTCAGgttgtaatct ... tcccctccagAGGCAATGTAGACAAGAAGGAAGCACTAGAGAACTTGGATCTCATTCTATT
EST: gi|209704905|gb|BW661708.1|BW661708
EST:     TTAGCCACAGTTCTGCAGGCATTTTTTGATTCTGTGGGCCTTCTGCTCAG                         AGGCAATGTAGACAAGAAGGAAGCACTAGAGAACTTGGATCTCATTCTATT
genomic: TTAGCCACAGTTCTGCAGGCATTTTTTGATTCTGTGGGCCTTCTGCTCAGgttgtaatct ... tcccctccagAGGCAATGTAGACAAGAAGGAAGCACTAGAGAACTTGGATCTCATTCTATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctatcactattaacacagtagtccttgatgattttactgccttttcccctccagAGGCAATGTAGACAAGAAGGAAGCACTAGAGAACTTGGATCTCATTCTATTGTGCATTGATGAAATTGTTGATGGCGG
                                ttttactgccttttcc  CT-rich tract
                            atgatttta  TA-rich tract