Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttgtaatcttatattaacaatttatctatgtttcgtgttcaagggtgttttcaatctatcactattaacacagtagtccttgatgattttactgccttttcccctccagAGGCAATGTAGACAAGAAGGAAGCACTAGAGAACTTGGATCTCATTCTATTGTGCATTGATGAAATTGTTGATGGCGGGTATGCTATATGCTATTCATAT

Basic information

species Glycine max
transcript GLYMA15G13190.2
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G13190.2 (Glycine max), 3'ss of exon 3
lower sequence: LOC_Os05g38610.1 (Oryza sativa), 3'ss of exon 3
gttgtaatct-tatattaacaatttatctatgtttc-gtgttcaagggtgttttcaatctatcactattaacacagtagtccttgatgattttactgccttttcccctccagAGGCAATGTAGACAAGAAGGAAGCACTAGAGAACTTGGATCTCATTCTATTGTGCATTGATGAAATTGTTGATGGCGGGTATGCTATATGCTATTCATAT
||| || ||    |||| |   | | | | | ||||    ||  |   ||||||  || |||  |  |  ||    | |    |  |   ||| | |  |  ||   | ||||   || || ||||| |    |||||| || ||  |||||||||| ||||||||| | ||||||||||||||||| ||                      
gttatactcaacctatttaatgtatctttgtttttctaccttttattttgttttacatttatgtccct--acctgattgcatgtattctgtttcccgtgtcatcggtttcagAAATAACGTCGACAAAAGAACAGCACTCGAAAATCTGGATCTCATCCTATTGTGCCTCGATGAAATTGTTGATGGAGG----------------------

upper sequence: GLYMA15G13190.2 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G431350_T01 (Zea mays), 3'ss of exon 3
gttgtaatct-tatattaacaatttatctatgtttcgtgttcaagggtgttttcaatctatcactattaacacag-tagtccttga-tgattttactgccttttcccctccagAGGCAATGTAGACAAGAAGGAAGCACTAGAGAACTTGGATCTCATTCTATTGTGCATTGATGAAATTGTTGATGGCGGGTATGCTATATGCTATTCATAT
||| |  ||  | |||||| | ||||||| ||   |   |     | | | ||  || |     | ||||  | | | ||   ||| ||  ||| |   |||      | ||||  ||  || ||||| | |  |||||| ||||| |||||| | || ||||||||| ||||||||||||||||||| ||                      
gttattttccctctattaa-actttatctttgcaaccactgttttgttctgttacatgttgttgtgttaatgctgattgtatatgaatgtgtttccaatcttggtggtttcagAAACATGGTTGACAAAAGGACAGCACTCGAGAATTTGGATATGATCCTATTGTGCCTTGATGAAATTGTTGATGGAGG----------------------

upper sequence: GLYMA15G13190.2 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM5G883149_T03 (Zea mays), 3'ss of exon 3
gttgtaatct-tatattaacaatttatctatgtttcgtgttcaagggtgttttcaatctatcactattaacacag-tagtccttga-tgattttactgccttttcccctccagAGGCAATGTAGACAAGAAGGAAGCACTAGAGAACTTGGATCTCATTCTATTGTGCATTGATGAAATTGTTGATGGCGGGTATGCTATATGCTATTCATAT
||| |  ||  | |||| | | ||||||| |    |   |    |     || ||   |||   | ||||  | | | ||   ||| ||  ||| |  ||||      | |||   ||  || ||||| | |  |||||| ||||| ||||| || || ||||||||  ||||||||||||||||||| ||                      
gttatcttccctctattga-agtttatcttttcaaccattgtttgttctgttacatgttattg-tgttaatgctgattgtatatgaatgtgtttccaaccttggtggtttcagGAACATGGTTGACAAAAGGACAGCACTCGAGAATTTGGACCTGATCCTATTGTGTCTTGATGAAATTGTTGATGGAGG----------------------

upper sequence: GLYMA15G13190.2 (Glycine max), 3'ss of exon 3
lower sequence: Vv10s0003g02760.t01 (Vitis vinifera), 3'ss of exon 4
gttgtaatcttatattaacaatttatctatgtttcgtgttcaagggtgttttcaatctatcactattaacacagtagtccttgatgattt-tactgccttttcc--cctccagAGGCAATGTAGACAAGAAGGAAGCACTAGAGAACTTGGATCTCATTCTATTGTGCATTGATGAAATTGTTGATGGCGGGTATGCTATATGCTATTCATAT
  | |  |   | | |||   ||  | |  |     | || |  |  |||   |   |    ||| ||| |    || | ||| |   |  |  |||||   |   | ||||| |||||||| ||||||||||| ||||| |||||||||||| | ||||| || ||| ||||||||||| ||||||||||                      
-gtatctttcaagaataattgttactattagcaatctcttaattgaggttcagatgttgatgctagtaatatgtgagcctttgttatctaattttgcctgcccttgcttccagGGGCAATGTGGACAAGAAGGAGGCACTTGAGAACTTGGATTTAATTCTTTTATGCCTTGATGAAATTATTGATGGCGG----------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13240267|gb|BG359576.1|BG359576
EST:     TTAGCCACAGTTCTGCAGGCATTTTTTGATTCTGTGGGCCTTCTGCTCAG                         AGGCAATGTAGACAAGAAAGAAGCACTAGAGAACTTGGATCTCATTCTATT
genomic: TTAGCCACAGTTCTGCAGGCATTTTTTGATTCTGTGGGCCTTCTGCTCAGgttgtaatct ... tcccctccagAGGCAATGTAGACAAGAAGGAAGCACTAGAGAACTTGGATCTCATTCTATT
EST: gi|5057863|gb|AI736339.1|AI736339
EST:     TTAGCCACAGTTCTGCAGGCATTTTTTGATTCTGTGGGCCTTCTGCTCAG                         AGGCAATGTAGACAAGAAGGAAGCACTAGAGAACTTGGATCTCATTCTATT
genomic: TTAGCCACAGTTCTGCAGGCATTTTTTGATTCTGTGGGCCTTCTGCTCAGgttgtaatct ... tcccctccagAGGCAATGTAGACAAGAAGGAAGCACTAGAGAACTTGGATCTCATTCTATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctatcactattaacacagtagtccttgatgattttactgccttttcccctccagAGGCAATGTAGACAAGAAGGAAGCACTAGAGAACTTGGATCTCATTCTATTGTGCATTGATGAAATTGTTGATGGCGGGTATGCTATATGCTATTCATAT
                                ttttactgccttttcc  CT-rich tract
                            atgatttta  TA-rich tract