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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ctttagcttacatgattaattttactacaacgttgccattaacataatatttccattttcttgcacttttcttgggatggctttgggttccctgttgcagGAAAACCGAATATCAGATACCACTGCTGCTGAAGCTAGGAGGGGGAAGGATATCCAAGGTATACCTTGGGATAGGTTGAGCATTAGTCGTGAGAAATATA

Basic information

species Glycine max
transcript GLYMA15G12980.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192303675|gb|FG998657.1|FG998657
EST:     TTGGTGAATCAGATTCAGATGATGACGACGACTACGAATATGACCCTTTG                         GAAAACCGAATATCAGATACCACTGCTGCTGAAGCTAGGAGGGGGAAGGAT
genomic: TTGGTGAATCAGATTCAGATGATGACGACGACTACGAATATGACCCTTTGgtttgttttg ... cctgttgcagGAAAACCGAATATCAGATACCACTGCTGCTGAAGCTAGGAGGGGGAAGGAT
EST: gi|192295897|gb|FG992663.1|FG992663
EST:     TTGGTGAATCAGATTCAGATGATGACGACGACTACGAATATGACCCTTTG                         GAAAACCGAATATCAGATACCACTGCTGCTGAAGCTAGGAGGGGGAAGGAT
genomic: TTGGTGAATCAGATTCAGATGATGACGACGACTACGAATATGACCCTTTGgtttgttttg ... cctgttgcagGAAAACCGAATATCAGATACCACTGCTGCTGAAGCTAGGAGGGGGAAGGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatatttccattttcttgcacttttcttgggatggctttgggttccctgttgcagGAAAACCGAATATCAGATACCACTGCTGCTGAAGCTAGGAGGGGGAAGGATATCCAAGGTATACCTTGGGATAGGTTGAGCATTAGTCGTGAGAAATATA
                                          ttccctgtt  CT-rich tract
         attttctt  TA-rich tract