Sequence
atgc intronic sequence ATGC exonic sequence...ggagttgttcatttcatggcttcaagcaatgactctggagttagagacttggatgtggaaagatttcaacttttgaaccacttttcctttccttggccagTGAAT
Basic information
species | Glycine max |
transcript | GLYMA15G12970.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA15G12970.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv00s0568g00010.t01 (Vitis vinifera), 3'ss of exon 7
-------------------------------------------------------------------------------------ggagttgttcatttcatggcttcaagcaatgactctggagttagagacttggatgtggaaagatttcaacttttgaaccacttttcctttccttggccagTGAAT
|| | ||||||||||||||||| ||||||| ||||||||| ||||| || |||| |||||||| |||| || || ||||||||||||||||||
gttgtttattatcttttgttgtagtggtggtaaagtaattcatatctaaatacaggagctgacttgagctaaaattttgtccagTGGGGCCACTCATTTCATGGCTTCAAATAATGACTGTGGAGTTAGGGACTTCGACATGGAGAGATTTCATCTTTCTAAGCATTTTTCCTTTCCTTGGCCA------
upper sequence: GLYMA15G12970.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv00s1206g00020.t01 (Vitis vinifera), 3'ss of exon 3
-------------------------------------------------------------------------------------ggagttgttcatttcatggcttcaagcaatgactctggagttagagacttggatgtggaaagatttcaacttttgaaccacttttcctttccttggccagTGAAT
|| | ||||||||||||||||| ||||||| ||||||||| ||||| || |||| |||||||| |||| || || ||||||||||||||||||
gttgtttattatctttttttgtagtggtgttaaagtaattcatatctaaatacaggagctgacttgagctaaaattttgtccagTGGGGCCACTCATTTCATGGCTTCAAATAATGACTGTGGAGTTAGGGACTTCGACATGGAGAGATTTCATCTTTCTAAGCATTTTTCCTTTCCTTGGCCA------ atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gacttggatgtggaaagatttcaacttttgaaccacttttcctttccttggccagTGAAT
ccacttttcctttcct CT-rich tract
aaagattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ggagttgttcatttcatggcttcaagcaatgactctggagttagagacttggatgtggaaagatttcaacttttgaaccacttttcctttccttggccagTGAAT
- - - - - - - catggct
- - - - - - - - - - - - - caatgac
- - - - - - - - - - - - - - - - - - - - - - - - - ggatgtg