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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattgtaaatcggcattcctgatttattattttaaaatggttgtgttgtgtttgtcacttctttaatgattttggtgcttgaattttcagAGTACTGTGGAGTTGCTTCTCCCTGTTGTTGTTGGGGACTATACCGATTTCTTTACGTCTCTGCATCACACTAAAAATTGTGGGCTCATTTTTCGTGGGC

Basic information

species Glycine max
transcript GLYMA15G12100.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213611759|gb|DB960659.1|DB960659
EST:     CAACCTTGAGGGACAACGTGGTTTTGAGGCAGAAATCACTACTGCCTGTG                         AGTACTGTGGAGTTGCTTCT
genomic: CAACCTTGAGGGACAACGTGGTTTTGAGGCAGAAATCACTACTGCCTGTGgtattgtaaa ... gaattttcagAGTACTGTGGAGTTGCTTCT
EST: gi|15203973|gb|BI426750.1|BI426750
EST:     CAACCTTGAGGGACAACGTGGTTTTGAGGCAGAAATCACTACTGCCTGTG                         AGTACTGTGGAGTTGCTTCTCCCTGTTGTTGTTGGGGACTATACCGATTTC
genomic: CAACCTTGAGGGACAACGTGGTTTTGAGGCAGAAATCACTACTGCCTGTGgtattgtaaa ... gaattttcagAGTACTGTGGAGTTGCTTCTCCCTGTTGTTGTTGGGGACTATACCGATTTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatggttgtgttgtgtttgtcacttctttaatgattttggtgcttgaattttcagAGTACTGTGGAGTTGCTTCTCCCTGTTGTTGTTGGGGACTATACCGATTTCTTTACGTCTCTGCATCACACTAAAAATTGTGGGCTCATTTTTCGTGGGC
                         ctttaat  putative branch site (score: 4)
                                                ttttc  putative PPT
                       ttctttaatgatttt  TA-rich tract