Sequence
atgc intronic sequence ATGC exonic sequencegtgagataattttgctctgttatttgtgctacactacacataatctttactgttttaatatatgctggtgaactggttattggctttttaattcttatttttgtgtttttgtagTGACTTAAGTGATAACAAGATCCATGATACAATTCCCTACCAGTTGCCACCGAATCTTACGAGCCT
Basic information
species | Glycine max |
transcript | GLYMA15G11820.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA15G11820.1 (Glycine max), 3'ss of exon 3
lower sequence: AT4G22130.1 (Arabidopsis thaliana), 3'ss of exon 3
gtgagataattttgctctgttatttgtgctacactacacataatctttactgttttaatatatgctggtgaactggttattggctttttaattcttatttttgtgtttttgtagTGACTTAAGTGATAACAAGATCCATGATACAATTCCCTACCAGTTGCCACCGAATCTTACGAGCCT
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--gtattgtttttggaattttccttctgtttttgtttgtttgatcttt-ctgctctt-tggattttggttcaataact-ttggtctctt-----tcgttttggt-----tacagGGATGTTAGTGGTAACAGCATCCATGATACACTTCCATATCAGTTGCCACCGAATCTCACAAGCCTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|7925311|gb|AW831398.1|AW831398EST: GATGGGACTCTGGGGTACCTGCTTTCGGACCTTATGTCACTCAGAGAGCT TGACTTAAGTGATAACAAGATCCATGATACAATTCCCTACCAGTTGCCACC
genomic: GATGGGACTCTGGGGTACCTGCTTTCGGACCTTATGTCACTCAGAGAGCTgtgagataat ... gtttttgtagTGACTTAAGTGATAACAAGATCCATGATACAATTCCCTACCAGTTGCCACC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atatgctggtgaactggttattggctttttaattcttatttttgtgtttttgtagTGACTTAAGTGATAACAAGATCCATGATACAATTCCCTACCAGTTGCCACCGAATCTTACGAGCCT
ttttaat putative branch site (score: 3)
tgttttt putative PPT
tttttaattcttattt TA-rich tract