1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtagttataaattcaaaagtattaattactgcatagctagctagtttctttgaattgacctgggaaaataatttatcacaacgtaaatgaattacacggttattatattttatttacataaaccgtgggttggatttatgagatgttaatgataacgataataataataataataattttgaaattcagGTTGTTCAGGGAAAGGTAGAGGATAAAAACGTTGGTGTTGGTGGAGGGAAGGTACCAAGACAGTTCCTTGATATAGGTCCCAGTGGCACAGCAGAAGTAG
species | Glycine max |
transcript | GLYMA15G11680.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TCACATTAATGCAACAGAACCAGCAGCGAACAGGAAGCACGGAAAATGAG GTTGTTCAGGGAAAGGTAGAGGATAAAAACGTTGGTGTTGGTGGAGGGAAGEST: gi|254334382|gb|GR844167.1|GR844167
genomic: TCACATTAATGCAACAGAACCAGCAGCGAACAGGAAGCACGGAAAATGAGgtagttataa ... tgaaattcagGTTGTTCAGGGAAAGGTAGAGGATAAAAACGTTGGTGTTGGTGGAGGGAAG
EST: TCACATTAATGCAACAGAACCAGCAGCGAACAGGAAGCACGGAAAATGAG GTTGTTCAGGGAAAGGTAGAGGATAAAAACGTTGGTGTTGGTGGAGGGAAGEST: gi|254346516|gb|GR856238.1|GR856238
genomic: TCACATTAATGCAACAGAACCAGCAGCGAACAGGAAGCACGGAAAATGAGgtagttataa ... tgaaattcagGTTGTTCAGGGAAAGGTAGAGGATAAAAACGTTGGTGTTGGTGGAGGGAAG
EST: TCACATTAATGCAACAGAACCAGCAGCGAACAGGAAGCACGGAAAATGAG GTTGTTCAGGGAAAGGTAGAGGATAAAAACGTTGGTGTTGGTGGAGGGAAGEST: gi|17400985|gb|BM177767.1|BM177767
genomic: TCACATTAATGCAACAGAACCAGCAGCGAACAGGAAGCACGGAAAATGAGgtagttataa ... tgaaattcagGTTGTTCAGGGAAAGGTAGAGGATAAAAACGTTGGTGTTGGTGGAGGGAAG
EST: TCACATTAATGCAACAGAACCAGCAGCGAACAGGAAGCACGGAAAATGAG GTTGTTCAGGGAAAGGTAGAGGATAAAAACGTTGGTGTTGGTGGAGGGAAGEST: gi|254327037|gb|GR836646.1|GR836646
genomic: TCACATTAATGCAACAGAACCAGCAGCGAACAGGAAGCACGGAAAATGAGgtagttataa ... tgaaattcagGTTGTTCAGGGAAAGGTAGAGGATAAAAACGTTGGTGTTGGTGGAGGGAAG
EST: TCACATTAATGCAACAGAACCAGCAGCGAACAGGAAGCACGGAAAATGAG GTTGTTCAGGGAAAGGTAGAGGATAAAAACGTTGGTGTTGGTGGAGGGAAG
genomic: TCACATTAATGCAACAGAACCAGCAGCGAACAGGAAGCACGGAAAATGAGgtagttataa ... tgaaattcagGTTGTTCAGGGAAAGGTAGAGGATAAAAACGTTGGTGTTGGTGGAGGGAAG
tttatgagatgttaatgataacgataataataataataataattttgaaattcagGTTGTTCAGGGAAAGGTAGAGGATAAAAACGTTGGTGTTGGTGGAGGGAAGGTACCAAGACAGTTCCTTGATATAGGTCCCAGTGGCACAGCAGAAGTAG
tgataac putative branch site (score: 2)
ttaatgataacgataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagttataaattcaaaagtattaattactgcatagctagctagtttctttgaattgacctgggaaaataatttatcacaacgtaaatgaattacacggttattatattttatttacataaaccgtgggttggatttatgagatgttaatgataacgataataataataataataattttgaaattcagGTTGTTCAGGGAAAGGTAGAGGATAAAAACGTTGGTGTTGGTGGAGGGAAGGTACCAAGACAGTTCCTTGATATAGGTCCCAGTGGCACAGCAGAAGTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT