1 5' 3' | 2 5' 3' | 3 5' 3' |
...tgatataacgagtgcaatttcataatttcagttagtctttttgtgttattagcttagggagtactgtgcataataacacactcttcactgagactttcagGTATACTGGGGAAGATGGATTTGAGATATCAATTCCCTCAGAGAGTGCAGTGGATCTTGCCAAGGCAATTCTGGAAAAATCTGAAGGGAAGATAAGACTG
species | Glycine max |
transcript | GLYMA15G11590.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TTCCGTGTGTTGGACATCAATGGTGTGCAGTGCTTTCTCACACGAACAGG GTATACTGGGGAAGATGGATTTGAGATATCAATTCCCTCAGAGAGTGCAGTEST: gi|14990460|gb|BI316133.1|BI316133
genomic: TTCCGTGTGTTGGACATCAATGGTGTGCAGTGCTTTCTCACACGAACAGGgtatgttttc ... agactttcagGTATACTGGGGAAGATGGATTTGAGATATCAATTCCCTCAGAGAGTGCAGT
EST: TTCCGTGTGTTGGACATCAATGGTGTGCAGTGCTTTCTCACACGAACAGG GTATACTGGGGAAGATGGATTTGAGATATCAATTCCCTCAGAGAGTGCAGTEST: gi|15204637|gb|BI427405.1|BI427405
genomic: TTCCGTGTGTTGGACATCAATGGTGTGCAGTGCTTTCTCACACGAACAGGgtatgttttc ... agactttcagGTATACTGGGGAAGATGGATTTGAGATATCAATTCCCTCAGAGAGTGCAGT
EST: GGACATCAATGGTGTGCAGTGCTTTCTCACACGAACAGG GTATACTGGGGAAGATGGATTTGAGATATCAATTCCCTCAGAGAGTGCAGTEST: gi|19053297|gb|BM731964.1|BM731964
genomic: GGACATCAATGGTGTGCAGTGCTTTCTCACACGAACAGGgtatgttttc ... agactttcagGTATACTGGGGAAGATGGATTTGAGATATCAATTCCCTCAGAGAGTGCAGT
EST: TTCCGTGTGTTGGACATCAATGGTGTGCAGTGCTTTCTCACACGAACAGG GTATACTGGGGAAGATGGATTTGAGATATCAATTCCCTCAGAGAGTGCAGT
genomic: TTCCGTGTGTTGGACATCAATGGTGTGCAGTGCTTTCTCACACGAACAGGgtatgttttc ... agactttcagGTATACTGGGGAAGATGGATTTGAGATATCAATTCCCTCAGAGAGTGCAGT
ttattagcttagggagtactgtgcataataacacactcttcactgagactttcagGTATACTGGGGAAGATGGATTTGAGATATCAATTCCCTCAGAGAGTGCAGTGGATCTTGCCAAGGCAATTCTGGAAAAATCTGAAGGGAAGATAAGACTG
taataac putative branch site (score: 1)
ctttc putative PPT
ataataaca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgatataacgagtgcaatttcataatttcagttagtctttttgtgttattagcttagggagtactgtgcataataacacactcttcactgagactttcagGTATACTGGGGAAGATGGATTTGAGATATCAATTCCCTCAGAGAGTGCAGTGGATCTTGCCAAGGCAATTCTGGAAAAATCTGAAGGGAAGATAAGACTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - -gagtgca
- - - - - - - - - - - - - - - - - - - ttttgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcataa