1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ccacttatatattttattttggccttaattttaatcgatgtgagatttggattttttccaataattcacgaacattaaagcttaatttttcatttttcagGTTTACGTGTGGAGCAAACAAAATCCCTTCATTCACATGAGCTTCCTGGGTCTCTTTACTTTCACTGCTGCCTACCTTCCATGG
species | Glycine max |
transcript | GLYMA15G11350.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGTCGTTTGCAAAAATAATATTCCTTAGCAACTCATTGACATTTATGATG GTTTACGTGTGGAGCAAACAAAATCCCTTCATTCACATGAGCTTNCTGGGTEST: gi|151394524|gb|EV264395.1|EV264395
genomic: AGTCGTTTGCAAAAATAATATTCCTTAGCAACTCATTGACATTTATGATGgtaagtcaca ... catttttcagGTTTACGTGTGGAGCAAACAAAATCCCTTCATTCACATGAGCTTCCTGGGT
EST: AGTCGTTTGCAAAAATAATATTCCTTAGCAACTCATTGACATTTATGATG GTTTACGTGTGGAGCAAACAAAATCCCTTCATTCACATGAGCTTCCTGGGTEST: gi|58023286|gb|CX710027.1|CX710027
genomic: AGTCGTTTGCAAAAATAATATTCCTTAGCAACTCATTGACATTTATGATGgtaagtcaca ... catttttcagGTTTACGTGTGGAGCAAACAAAATCCCTTCATTCACATGAGCTTCCTGGGT
EST: AGTCGTTTGCAAAAATAATATTCCTTAGCAACTCATTGACATTTATGATG GTTTACGTGTGGAGCAAACAAAATCCCTTCATTCACATGAGCTTCCTGGGTEST: gi|15287660|gb|BI471551.1|BI471551
genomic: AGTCGTTTGCAAAAATAATATTCCTTAGCAACTCATTGACATTTATGATGgtaagtcaca ... catttttcagGTTTACGTGTGGAGCAAACAAAATCCCTTCATTCACATGAGCTTCCTGGGT
EST: AGTCGTTTGCAAAAATAATATTCCTTAGCAACTCATTGACATTTATGATG GTTTACGTGT-GAGCAAACAAAATCCCTTCATTCACATGAGCTTCCTGGGTEST: gi|58016888|gb|CX703630.1|CX703630
genomic: AGTCGTTTGCAAAAATAATATTCCTTAGCAACTCATTGACATTTATGATGgtaagtcaca ... catttttcagGTTTACGTGTGGAGCAAACAAAATCCCTTCATTCACATGAGCTTCCTGGGT
EST: AGTCGTTTGCAAAAATAATATTCCTTAGCAACTCATTGACATTTATGATG GTTTACGTGTGGAGCAAACAAAATCCCTTCATTCACATGAGCTTCCTGGGTEST: gi|151397563|gb|EV267436.1|EV267436
genomic: AGTCGTTTGCAAAAATAATATTCCTTAGCAACTCATTGACATTTATGATGgtaagtcaca ... catttttcagGTTTACGTGTGGAGCAAACAAAATCCCTTCATTCACATGAGCTTCCTGGGT
EST: AGTCGTTTGCAAAAATAATATTCCTTAGCAACTCATTGACATTTATGATG GTTTACGTGTGGAGCAAACAAAATCCCTTCATTCACATGAGCTTCCTGGGTEST: gi|254322572|gb|GR837986.1|GR837986
genomic: AGTCGTTTGCAAAAATAATATTCCTTAGCAACTCATTGACATTTATGATGgtaagtcaca ... catttttcagGTTTACGTGTGGAGCAAACAAAATCCCTTCATTCACATGAGCTTCCTGGGT
EST: TCGTTTGCAAAA-TAATATTCCCTTAGCAACTTCATTGACATTTATGATG GTTTACGTGGTGGAGCAAACAAAATCCCTTCATTCACATGAGCTTCCTGGGEST: gi|9203644|gb|BE329868.1|BE329868
genomic: TCGTTTGCAAAAATAATATTCC-TTAGCAACT-CATTGACATTTATGATGgtaagtcaca ... catttttcagGTTTACGTG-TGGAGCAAACAAAATCCCTTCATTCACATGAGCTTCCTGGG
EST: AGTCGTTTGCANAAATAATATTCCTTAGCAACTCATTGACATTTATGATG GTTTACGTGTGGAGCAAACAAAATCCCTTCATTCACATGAGCTTTCTGTGTEST: gi|19453304|gb|BM954714.1|BM954714
genomic: AGTCGTTTGCAAAAATAATATTCCTTAGCAACTCATTGACATTTATGATGgtaagtcaca ... catttttcagGTTTACGTGTGGAGCAAACAAAATCCCTTCATTCACATGAGCTTCCTGGGT
EST: AGTCGTTTGCAAAAATAATATTCCTTAGCAACTCATTGACATTTATGATG GTTTACGTGTGGAEST: gi|151400841|gb|EV270655.1|EV270655
genomic: AGTCGTTTGCAAAAATAATATTCCTTAGCAACTCATTGACATTTATGATGgtaagtcaca ... catttttcagGTTTACGTGTGGA
EST: AGTCGTTTGCAAAAATAATATTCCTTAGCAACTCATTGACATTTATGATG GTTTACGTGTGGAGCAAACAAAATCCCTTCATTCACATGAGCTTCCTGGGTEST: gi|23731152|gb|BU763683.1|BU763683
genomic: AGTCGTTTGCAAAAATAATATTCCTTAGCAACTCATTGACATTTATGATGgtaagtcaca ... catttttcagGTTTACGTGTGGAGCAAACAAAATCCCTTCATTCACATGAGCTTCCTGGGT
EST: AAATAATATTCCTTAGCAACTCATTGACATTTATGATG GTTTACGTGTGGAGCAAACAAAATCCCTTCATTCACATGAGCTTCCTGGGTEST: gi|213608886|gb|DB980784.1|DB980784
genomic: AAATAATATTCCTTAGCAACTCATTGACATTTATGATGgtaagtcaca ... catttttcagGTTTACGTGTGGAGCAAACAAAATCCCTTCATTCACATGAGCTTCCTGGGT
EST: CTTAGCAACTCATTGACATTTCCGATG GTTTACGTG-GCCTGCAAACAAATTTCCTTCATTCACATGAGCTTCCTGGGEST: gi|120532687|gb|EH260820.1|EH260820
genomic: CTTAGCAACTCATTGACATTTATGATGgtaagtcaca ... catttttcagGTTTACGTGTG-GAGCAAACAAAATCCCTTCATTCACATGAGCTTCCTGGG
EST: AGTCGTTTGCAAAAATAATATTCCTTAGCAACTCATTGACATTTATGATG GTTTACGTGTGGAGCAAACAAAATCCCTTCATTCACATGAGCTTCCTGGGTEST: gi|214006459|gb|DB987212.1|DB987212
genomic: AGTCGTTTGCAAAAATAATATTCCTTAGCAACTCATTGACATTTATGATGgtaagtcaca ... catttttcagGTTTACGTGTGGAGCAAACAAAATCCCTTCATTCACATGAGCTTCCTGGGT
EST: ATTGACATTTATGATG GTTTACGTGTGGAGCAAACAAAATCCCTTCATTCACATGAGCTTCCTGGGTEST: gi|213598283|gb|DB970167.1|DB970167
genomic: ATTGACATTTATGATGgtaagtcaca ... catttttcagGTTTACGTGTGGAGCAAACAAAATCCCTTCATTCACATGAGCTTCCTGGGT
EST: AGTCGTTTGCAAAAATAATATTCCTTAGCAACTCATTGACATTTATGATG GTTTACGTGTGGAGCAAACAAAATCCCTTCATTCACATGAGCTTCCTGGGTEST: gi|16348305|gb|BI973900.1|BI973900
genomic: AGTCGTTTGCAAAAATAATATTCCTTAGCAACTCATTGACATTTATGATGgtaagtcaca ... catttttcagGTTTACGTGTGGAGCAAACAAAATCCCTTCATTCACATGAGCTTCCTGGGT
EST: AGTCGTTTGCAAAAATAATATTCCTTAGCAACTCATTGACATTTATGATG GTTTACGTGTGGAGCAAAEST: gi|18733025|gb|BM527383.1|BM527383
genomic: AGTCGTTTGCAAAAATAATATTCCTTAGCAACTCATTGACATTTATGATGgtaagtcaca ... catttttcagGTTTACGTGTGGAGCAAA
EST: AGTCGTTTGCAAAAATAATATTCCTTAGCAACTCATTGACATTTATGATG GTTTACGTGTGGAGCAAACAAAATCCCTTCATTCACATGAGCTTCCTG
genomic: AGTCGTTTGCAAAAATAATATTCCTTAGCAACTCATTGACATTTATGATGgtaagtcaca ... catttttcagGTTTACGTGTGGAGCAAACAAAATCCCTTCATTCACATGAGCTTCCTG
tttggattttttccaataattcacgaacattaaagcttaatttttcatttttcagGTTTACGTGTGGAGCAAACAAAATCCCTTCATTCACATGAGCTTCCTGGGTCTCTTTACTTTCACTGCTGCCTACCTTCCATGG
gcttaat putative branch site (score: 4)
tttttcatttttc CT-rich tract
aacattaaagcttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccacttatatattttattttggccttaattttaatcgatgtgagatttggattttttccaataattcacgaacattaaagcttaatttttcatttttcagGTTTACGTGTGGAGCAAACAAAATCCCTTCATTCACATGAGCTTCCTGGGTCTCTTTACTTTCACTGCTGCCTACCTTCCATGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC