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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgaatctttttccctgaaactatcaccttcaattgtacatagctctctttctcagttcatcacctcttaattccgtttgtttgcttgcagGATTATGTTGCAACACGGTGGTATAGGGCTCCTGAGTTGTGTGGATCCTTTTTTTCCAAG

Basic information

species Glycine max
transcript GLYMA15G10940.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G10940.4 (Glycine max), 3'ss of exon 3
lower sequence: Vv05s0020g02530.t01 (Vitis vinifera), 3'ss of exon 3
-------------------------------------------gtatgaatct--ttttccctgaaactatcaccttcaattg--tacatagctctctttctcagttcatcacctcttaatt--ccgttt-------gtttgcttgcagGATTATGTTGCAACACGGTGGTATAGGGCTCCTGAGTTGTGTGGATCCTTTTTTTCCAAG
                                           | |    |||  |||||  ||  |||   |  |     ||  || |||    | |||| |  |  ||  |     ||||  | | ||        | || || |||||||||||||||||| ||||||| ||||| ||||| |||||||| || ||||| ||||||
gtatgcttcttccccatttgtgtgtgtttcttgtcaatcaattgcaatggtctatttttctttgtgacttaaagttgtgtatgggtaaataatgatgtttccctatgaatatctctagaattgacagctttaatttcatgtgattacagGATTATGTTGCAACAAGGTGGTACAGGGCACCTGAATTGTGTGGTTCATTTTTCTCCAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10238909|gb|BE807805.1|BE807805
EST:     GTCTTGCCAGAGTGGCTTTCAATGATACTCCCACTGCTATTTTCTGGACA                         GATTATGTTGCAACACGGTGGTATAGGGCTCCTGAGTTGTGTGGATCCTTT
genomic: GTCTTGCCAGAGTGGCTTTCAATGATACTCCCACTGCTATTTTCTGGACAgtatgaatct ... ttgcttgcagGATTATGTTGCAACACGGTGGTATAGGGCTCCTGAGTTGTGTGGATCCTTT
EST: gi|193585418|gb|FK539097.1|FK539097
EST:     GTCTTGCCAGAGTGGCTTTCAACGATACTCCCACTGCTATTTTCTGGACA                         GATTATGTTGCAACACG
genomic: GTCTTGCCAGAGTGGCTTTCAATGATACTCCCACTGCTATTTTCTGGACAgtatgaatct ... ttgcttgcagGATTATGTTGCAACACG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tacatagctctctttctcagttcatcacctcttaattccgtttgtttgcttgcagGATTATGTTGCAACACGGTGGTATAGGGCTCCTGAGTTGTGTGGATCCTTTTTTTCCAAG
                             tcttaat  putative branch site (score: 3)
                                        tttgttt  putative PPT
                             tcttaatt  TA-rich tract