1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...tcatgtttgtgtgtacataattactcaagttcatgaatcatcttcaattttattgcttctaaatgattcttgtatgtcataatcttgtcttgatttgcagGGGACTTTCTGTAGTGCATTGTGGCGTGGAACAAAGGTTGCAGTAAAAAAGCTTGGGGAGGATGTAATTAGTGATGAGGAGAAAGT
species | Glycine max |
transcript | GLYMA15G09490.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AAATCAATCCTAAAGAGCTTGATTTTACCAACAGTGTGGAGATAACGAAG GGGACTTTCTGTAGTGCATTGTGGCGTGGAACAAAGGTTGCAGTAAAAAAGEST: gi|17518571|gb|BM187613.1|BM187613
genomic: AAATCAATCCTAAAGAGCTTGATTTTACCAACAGTGTGGAGATAACGAAGgtaaaaactt ... tgatttgcagGGGACTTTCTGTAGTGCATTGTGGCGTGGAACAAAGGTTGCAGTAAAAAAG
EST: AAATCAATCCTAAAGAGCTTGATTTTACCAACAGTGTGGAGATAACGAAG GGGACTTTCTGTAGTGCATTGTGGCGTGGAACAAAGGTTGCAGTAAAAAAGEST: gi|11688954|gb|BF596692.1|BF596692
genomic: AAATCAATCCTAAAGAGCTTGATTTTACCAACAGTGTGGAGATAACGAAGgtaaaaactt ... tgatttgcagGGGACTTTCTGTAGTGCATTGTGGCGTGGAACAAAGGTTGCAGTAAAAAAG
EST: AAATCAATCCTAAAGAGCTTGATTTTACCAACAGTGTGGAGATAACGAAG GGGACTTTCTGTAGTGCATTGAGGCGTGGAACAAATGTTGCAGTAAAAAAG
genomic: AAATCAATCCTAAAGAGCTTGATTTTACCAACAGTGTGGAGATAACGAAGgtaaaaactt ... tgatttgcagGGGACTTTCTGTAGTGCATTGTGGCGTGGAACAAAGGTTGCAGTAAAAAAG
aattttattgcttctaaatgattcttgtatgtcataatcttgtcttgatttgcagGGGACTTTCTGTAGTGCATTGTGGCGTGGAACAAAGGTTGCAGTAAAAAAGCTTGGGGAGGATGTAATTAGTGATGAGGAGAAAGT
tcttgtctt CT-rich tract
taaatgatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcatgtttgtgtgtacataattactcaagttcatgaatcatcttcaattttattgcttctaaatgattcttgtatgtcataatcttgtcttgatttgcagGGGACTTTCTGTAGTGCATTGTGGCGTGGAACAAAGGTTGCAGTAAAAAAGCTTGGGGAGGATGTAATTAGTGATGAGGAGAAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
tcatgtt
- - - -tgtgtgt
- - - - - - - - - - - - - - - -catgaat
- - - - - - - - - - - - - - - - - - - catcttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtatgt