1 5' 3' | 2 5' 3' | 3 5' 3' |
...caacatgtactttccatttgtaagcagttaactctgcaatattacaagcatgtttgaaatttcttccctcgccaagtaacacaatgccttggtgttgcagGTAACAGTTGGACGCAAGCCTGTAACTGGACTTAGGCTTAGCCTAGAGGGCAGCAAACAGAATCGACTTGCTATTCATTTGCAGCATTTAGTCTCACTCC
species | Glycine max |
transcript | GLYMA15G09440.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTCTTCAGTTCAGCTTGATGGGACCTAAGCTTTTTGTCAGTCCAGATCAG GTAACAGTTGGACGCAAGCCTGTAACTGGACTTAGGCTTAGCCTAGAGGGCEST: gi|151400280|gb|EV270094.1|EV270094
genomic: CTCTTCAGTTCAGCTTGATGGGACCTAAGCTTTTTGTCAGTCCAGATCAGgtaatcttta ... ggtgttgcagGTAACAGTTGGACGCAAGCCTGTAACTGGACTTAGGCTTAGCCTAGAGGGC
EST: CTCTTCAGTTCAGCTTGATGGGACCTAAGCTTTTTGTCAGTCCAGATCAG GTAACAGTTGGACGCAAGCCTGTAACTGGACTTAGGCTTAGCCTAGAGGGCEST: gi|21888398|gb|BQ741611.1|BQ741611
genomic: CTCTTCAGTTCAGCTTGATGGGACCTAAGCTTTTTGTCAGTCCAGATCAGgtaatcttta ... ggtgttgcagGTAACAGTTGGACGCAAGCCTGTAACTGGACTTAGGCTTAGCCTAGAGGGC
EST: CTCTTCAGTTCAGCTTGATGGGACCTAAGCTTTTTGTCAGTCCAGATCAG GTAACAGTTGGACGCAAGCCTGTAACTGGACTTAGGCTTAGCCTAGAGGGC
genomic: CTCTTCAGTTCAGCTTGATGGGACCTAAGCTTTTTGTCAGTCCAGATCAGgtaatcttta ... ggtgttgcagGTAACAGTTGGACGCAAGCCTGTAACTGGACTTAGGCTTAGCCTAGAGGGC
aagcatgtttgaaatttcttccctcgccaagtaacacaatgccttggtgttgcagGTAACAGTTGGACGCAAGCCTGTAACTGGACTTAGGCTTAGCCTAGAGGGCAGCAAACAGAATCGACTTGCTATTCATTTGCAGCATTTAGTCTCACTCC
aagtaac putative branch site (score: 2)
tttgaaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caacatgtactttccatttgtaagcagttaactctgcaatattacaagcatgtttgaaatttcttccctcgccaagtaacacaatgccttggtgttgcagGTAACAGTTGGACGCAAGCCTGTAACTGGACTTAGGCTTAGCCTAGAGGGCAGCAAACAGAATCGACTTGCTATTCATTTGCAGCATTTAGTCTCACTCC
- -catgtac
- - - - - - - - - tgtaagc
- - - - - - - - - - - - - - - -ctctgca
- - - - - - - - - - - - - - - - - - - - - - - -gcatgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caatgcc