Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
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 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatggtttttgctggaacccttccatagtgcagagtttcctgaagttacctgagaaacattgatcaatgattggcttatccgtcctttcttatatttgctacttacagGAATTCAAAGGCTATGTCTTCAAAATTACTGGAGGTTGCGACAAGCAAGGATTTCCAATGAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGC

Basic information

species Glycine max
transcript GLYMA15G08210.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G08210.1 (Glycine max), 3'ss of exon 3
lower sequence: LOC_Os07g42950.1 (Oryza sativa), 3'ss of exon 3
gtatggtttttgctggaacccttccatagtgcagagtttcctgaagttacctgagaaacattgatcaatgattggcttatccgtcctttcttatatttgctacttacagGAATTCAAAGGCTATGTCTTCAAAATTACTGGAGGTTGCGACAAGCAAGGATTTCCAATGAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGC
                         |||  |    |  || ||| ||| ||| |  |   ||    | |  |  | |  |      | |||    |||     |  ||||||||||| |||||||||||||| || |  || ||||| |||||||| || || || |||||||| |||||| | ||  |||| ||||| |||||  | |
----------------------gtaatatcgtgaggcctc-tgatgtttcctaattactgttacctagtcttaagatgttaacatatctctctccttt----ttctcagGAATTCAAGGGCTATGTCTTCAAGATCATGGGGGGTTGTGACAAGCAGGGTTTCCCTATGAAGCAGGGAGTGCTCACTGCTGGACGTGTCCGCCTTCTTC

upper sequence: GLYMA15G08210.1 (Glycine max), 3'ss of exon 3
lower sequence: LOC_Os03g27260.1 (Oryza sativa), 3'ss of exon 3
gtatggtttttgctggaacccttccatagtgcagagtttcctgaagttacctgagaaacattgatcaatga-ttggcttatccgtcctttcttatatttgctacttacagGAATTCAAAGGCTATGTCTTCAAAATTACTGGAGGTTGCGACAAGCAAGGATTTCCAATGAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGC
              | ||   |||  | |      | | | |||   | |    |      |  | ||||| |||| | |       | |||    ||||     ||||||||||||| |||||||| ||||| || |  ||||| || ||||||||||| || || |||||||| || ||| | ||  |||| ||||| |||||  | |
--------------gtaat--ttctttggcaatttgctccatgattcttcaactgtcttgctatttaatgagttggatgactaagtttgtct---gtttg-----tacagGAATTCAAGGGCTATGTATTCAAGATCATGGGAGGCTGTGACAAGCAAGGTTTCCCCATGAAGCAGGGTGTGCTTACTTCTGGACGTGTCCGCCTTCTCC

upper sequence: GLYMA15G08210.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G040600_T01 (Zea mays), 3'ss of exon 5
gtatggtttttgctggaacccttccatagtgcagagtttcctgaagttacctgagaaacattgatcaatgattggcttatccgtcctttcttatatttgctacttacagGAATTCAAAGGCTATGTCTTCAAAATTACTGGAGGTTGCGACAAGCAAGGATTTCCAATGAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGC
|  | |  ||| |   |||  |   ||     |   |||| |||   | | |||       ||||     | |    |||  ||    | |  |  ||  |  || ||||| ||||| || ||||||||||| || |  || || || ||||||||||| || ||||||||||||||||| |||||  ||||||||||||||||  |||
gagttgaatttac--aaactttgggatgactta---tttcttga---tccatgactcttgctgatgtcatacttaaatataggtgtgatatgttcctttgt-tttgcagGAGTTCAAGGGTTATGTCTTCAAGATCATGGGTGGATGTGACAAGCAAGGGTTCCCAATGAAGCAAGGAGTTTTGACTTCTGGTCGTGTTCGCCTTCTGC

upper sequence: GLYMA15G08210.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G054136_T09 (Zea mays), 3'ss of exon 3
gtatggtttttgctggaacccttccatagtgcagagtttcctgaagttacctgagaaacattgatcaatgattggcttatccgtcctttct-tatatttgctacttacagGAATTCAAAGGCTATGTCTTCAAAATTACTGGAGGTTGCGACAAGCAAGGATTTCCAATGAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGC
              | || | ||      ||     |||| |||   | | |||       ||||     | |    |||  ||    | | | | |||| |  || ||||| ||||| || ||||||||||| || |  || || || ||||||||||| || ||||||||||||||||| |||||  ||||||||||||| ||  |||
--------------gtaaacttt--gggatgacttatttcttga---tccatgactcttgctgatttcatacttaaatataggtgtgatatgtttctttgtt--ttgcagGAGTTCAAGGGTTATGTCTTCAAGATCATGGGTGGATGTGACAAGCAAGGCTTCCCAATGAAGCAAGGAGTTTTGACTTCTGGTCGTGTTCGTCTTCTGC

upper sequence: GLYMA15G08210.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G054136_T08 (Zea mays), 3'ss of exon 3
-------gtatggtttttgctggaaccc-ttccatagtgcagagtttcctgaagttacctgagaaacattgatca-atgattggcttatccgtcctttcttatatttgctacttacagGAATTCAAAGGCTATGTCTTCAAAATTACTGGAGGTTGCGACAAGCAAGGATTTCCAATGAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGC
       ||   | | | | ||        |     |||     |||| |||   | | |||       ||||   ||  ||         |   |    | | | |     || ||||| ||||| || ||||||||||| || |  || || || ||||||||||| || ||||||||||||||||| |||||  ||||||||||||| ||  |||
gtcagtggtgatgctctgggtgaggtaaactttggggtgacttatttcttga---tccatgactcttgctgatttcatacttaaaaatataggtgtgatatgtttctttgttttgcagGAGTTCAAGGGTTATGTCTTCAAGATCATGGGTGGATGTGACAAGCAAGGCTTCCCAATGAAGCAAGGAGTTTTGACTTCTGGTCGTGTTCGTCTTCTGC

upper sequence: GLYMA15G08210.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G054136_T05 (Zea mays), 3'ss of exon 3
gtatggtttttgctggaacccttccatagtgcagagtttcctgaagttacctgagaaacattgatca-atgattggcttatccgtcctttcttatatttgctacttacagGAATTCAAAGGCTATGTCTTCAAAATTACTGGAGGTTGCGACAAGCAAGGATTTCCAATGAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGC
        |  |   |      |     |||     |||| |||   | | |||       ||||   ||  ||         |   |    | | | |     || ||||| ||||| || ||||||||||| || |  || || || ||||||||||| || ||||||||||||||||| |||||  ||||||||||||| ||  |||
-------ctgggtgaggtaaactttggggtgacttatttcttga---tccatgactcttgctgatttcatacttaaaaatataggtgtgatatgtttctttgttttgcagGAGTTCAAGGGTTATGTCTTCAAGATCATGGGTGGATGTGACAAGCAAGGCTTCCCAATGAAGCAAGGAGTTTTGACTTCTGGTCGTGTTCGTCTTCTGC

upper sequence: GLYMA15G08210.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G054136_T01 (Zea mays), 3'ss of exon 3
gtatggtttttgctggaacccttccatagtgcagagtttcctgaagttacctgagaaacattgatcaatgattggcttatccgtcctttcttatatttgctacttacagGAATTCAAAGGCTATGTCTTCAAAATTACTGGAGGTTGCGACAAGCAAGGATTTCCAATGAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGC
   |    ||||  |  ||   |   | |  |   |  || ||  | |  |      | | | |  |||    |  | ||  ||   ||  |           || ||||| ||||| || ||||||||||| || |  || || || ||||||||||| || ||||||||||||||||| |||||  ||||||||||||| ||  |||
--gtaaactttggggtgacttatttcttgatccatgactcttgctgatttc------atacttaaaaatataggtgtgatatgtttctttgt----------tttgcagGAGTTCAAGGGTTATGTCTTCAAGATCATGGGTGGATGTGACAAGCAAGGCTTCCCAATGAAGCAAGGAGTTTTGACTTCTGGTCGTGTTCGTCTTCTGC

upper sequence: GLYMA15G08210.1 (Glycine max), 3'ss of exon 3
lower sequence: AT4G31700.1 (Arabidopsis thaliana), 3'ss of exon 3
gtatggtttttgctggaacccttccatagtgcagagtttcctgaagttacc--tgagaaacattgatcaatgattggcttatccgtcctttcttatatttgctacttacagGAATTCAAAGGCTATGTCTTCAAAATTACTGGAGGTTGCGACAAGCAAGGATTTCCAATGAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGC
|||  | ||    |     | | |  |  |  |  |  |    |  ||| |  |  ||| ||       ||| || | ||||            ||  ||| || || ||||| |||||||| || || ||||| || |  || |||||||| |||||||| || ||||||||||| ||||| ||||| || || ||||||||||| ||||
gtacagattccatttt--tcttactttgatctaatgagtgtgaagattagcatttcgaagcagatgatgatgttttgtttatg----------aattgttgtta-ttgcagGAGTTCAAAGGATACGTTTTCAAGATCAAGGGTGGTTGCGATAAGCAAGGTTTCCCAATGAAGCAGGGAGTTTTGACTCCAGGCCGTGTTCGCCTTTTGC

upper sequence: GLYMA15G08210.1 (Glycine max), 3'ss of exon 3
lower sequence: AT4G31700.2 (Arabidopsis thaliana), 3'ss of exon 1
--gtatggtttttgctggaacccttccatagtgcagagtttcctgaagttacc--tgagaaacattgatcaatgattggcttatccgtcctttcttatatttgctacttacagGAATTCAAAGGCTATGTCTTCAAAATTACTGGAGGTTGCGACAAGCAAGGATTTCCAATGAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGC
  |||  | ||    |     | | |  |  |  |  |  |    |  ||| |  |  ||| ||       ||| || | ||||            ||  ||| || || ||||| |||||||| || || ||||| || |  || |||||||| |||||||| || ||||||||||| ||||| ||||| || || ||||||||||| ||||
aggtacagattccatttt--tcttactttgatctaatgagtgtgaagattagcatttcgaagcagatgatgatgttttgtttatg----------aattgttgtta-ttgcagGAGTTCAAAGGATACGTTTTCAAGATCAAGGGTGGTTGCGATAAGCAAGGTTTCCCAATGAAGCAGGGAGTTTTGACTCCAGGCCGTGTTCGCCTTTTGC

upper sequence: GLYMA15G08210.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv18s0001g06290.t01 (Vitis vinifera), 3'ss of exon 3
gtatggtttttgctggaacccttccatagtgcagagtttcctgaagttacctgagaaacattgatcaatgattggcttatccgtcctttcttatatttgctacttacagGAATTCAAAGGCTATGTCTTCAAAATTACTGGAGGTTGCGACAAGCAAGGATTTCCAATGAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGC
             |       | |||| ||   |   | ||  || |   ||   | || | |||  ||       ||||   |  ||  || | | ||    | ||||||||| || |||||||| |||||||| |  ||||| || ||||||||||| || ||||||||||| |||||||| || |||||||||||| | |||||||
------------gtaagcatttaccattgttatgcaatgccaaaattctactatcagac-tagatttatataacatttatttttgtttgtttgtttgtg----tgacagGAATTTAATGGCTATGTATTCAAAATCATGGGAGGCTGTGACAAGCAAGGGTTCCCAATGAAGCAGGGAGTGTTAACTCCTGGTCGTGTTAGTCTCTTGC

upper sequence: GLYMA15G08210.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv07s0191g00060.t01 (Vitis vinifera), 3'ss of exon 3
gtatggtttttgctggaacccttccatagtgcagagtttcctgaagttacctgagaaacattgatcaatgattggcttatccgtcctttcttatatttgctacttacagGAATTCAAAGGCTATGTCTTCAAAATTACTGGAGGTTGCGACAAGCAAGGATTTCCAATGAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGC
               | |   ||   |  | |     ||| |    | || ||     | ||  | |  || ||  ||||   |  | |||||    || |  | |||||| ||||| || ||||| |||||||| |  ||||| || ||||||||||| |||||||||||||| |||||  ||||||| || || || |  ||  |||
---------------gtatgattttgt--tactattcttcttaggataacttgc----cctttgttag-gaatgatttattgatg-tatcttaagcgtgtt--tgacagGAGTTCAAGGGTTATGTATTCAAAATAATGGGAGGCTGTGACAAGCAAGGTTTTCCAATGAAGCAGGGAGTACTGACCCCAGGCCGAGTCCAACTTCTGC

upper sequence: GLYMA15G08210.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv03s0017g01350.t01 (Vitis vinifera), 3'ss of exon 3
gtatggtttttgctggaacccttccatagtgcagagtttcctgaagttacctgagaaacattgatcaatgattggcttatccgtcctttcttat-atttgctacttacagGAATTCAAAGGCTATGTCTTCAAAATTACTGGAGGTTGCGACAAGCAAGGATTTCCAATGAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGC
              | |  ||||   |  |       |||    | |||  |     | |||| |   ||||   || |||   |    | | | || ||||  | |||||| ||||| |||||||| ||||| || |  || ||||| ||||||||||| ||||| |||||||| |||||  |||| ||||| |||||| | || ||||
--------------gtatgccttttctgct------cttctcccacttatttatctcatattgtt---tgatctactaatcatacaaaacatgtcatctgct--tcacagGAGTTCAAGGGCTATGTTTTCAAGATCATGGGTGGTTGTGACAAGCAAGGGTTTCCCATGAAGCAGGGAGTACTGACTCCTGGCCGTGTTAGTCTTTTGC

upper sequence: GLYMA15G08210.1 (Glycine max), 3'ss of exon 3
lower sequence: EFJ14726 (Selaginella moellendorffii), 3'ss of exon 2
gtatggtttttgctggaacccttccatagtgcagagtttcctgaagttacctgagaaacattgatcaatgattg-gcttatccgtcctttcttatatttgctacttacagGAATTCAAAGGCTATGTCTTCAAAATTACTGGAGGTTGCGACAAGCAAGGATTTCCAATGAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGC
                                                           |||  ||     ||| ||||  | ||   |||| | ||||||    | |||||||||||||||||||||||||| || |  ||||| || |||||| | || || || |||||||| || ||  | |   |    ||||| |||||| || 
-------------------------------------------------------gtgaattcgtcggcatttgagctttgctgtttgttctaagatttgcag--tgcagGAATTCAAAGGCTATGTCTTCAAGATCATGGGAGGATGTGACAAGGATGGCTTCCCTATGAAGCAGGGCGTCCTCAAGACGAAGCGTGTGCGCCTCCTGT

upper sequence: GLYMA15G08210.1 (Glycine max), 3'ss of exon 3
lower sequence: EFJ26393 (Selaginella moellendorffii), 3'ss of exon 2
gtatggtttttgctggaacccttccatagtgcagagtttcctgaagttacctgagaaacattgatcaatgattg-gcttatccgtcctttcttatatttgctacttacagGAATTCAAAGGCTATGTCTTCAAAATTACTGGAGGTTGCGACAAGCAAGGATTTCCAATGAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGC
                                                           |||  ||     ||| ||||  | ||   |||| | ||||||    | |||||||||||||||||||||||||| || |  ||||| || |||||| | || || || |||||||| || ||  | |   |    ||||| |||||| || 
-------------------------------------------------------gtgaattcgtcggcatttgagctttgctgtttgttctaagatttgcag--tgcagGAATTCAAAGGCTATGTCTTCAAGATCATGGGAGGATGTGACAAGGATGGCTTCCCTATGAAGCAGGGCGTTCTCAAGACGAAGCGTGTGCGCCTCCTGT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192326140|gb|FK016257.1|FK016257
EST:     TTTGGGACAAGAGGATCTCACAAGAGGTTGTTGGTGATGCTCTGGGTGAG                         GAATTCAAAGGCTATGTCTTCAAAATTACTGGAGGTTGCGACAAGCAAGGA
genomic: TTTGGGACAAGAGGATCTCACAAGAGGTTGTTGGTGATGCTCTGGGTGAGgtatggtttt ... ctacttacagGAATTCAAAGGCTATGTCTTCAAAATTACTGGAGGTTGCGACAAGCAAGGA
EST: gi|13251887|gb|BG362790.1|BG362790
EST:     TTTGGGACAAGAGGATCTCACAAGAGGTTGTTGGTGATGCTCTGGGTGAG                         GAATTCAAAGGCTATGTCTTCAAAATTACTGGAGGTTGCGACAAGCAAGGA
genomic: TTTGGGACAAGAGGATCTCACAAGAGGTTGTTGGTGATGCTCTGGGTGAGgtatggtttt ... ctacttacagGAATTCAAAGGCTATGTCTTCAAAATTACTGGAGGTTGCGACAAGCAAGGA
EST: gi|193672748|gb|FK615478.1|FK615478
EST:     TTTGGGACAAGAGGATCTCACAAGAGGTTGTTGGTGATGCTCTGGGTGAG                         GAATTCAAAGGCTATGTCTTCAAAATTACTGGAGGTTGCGACAAGCAAGGA
genomic: TTTGGGACAAGAGGATCTCACAAGAGGTTGTTGGTGATGCTCTGGGTGAGgtatggtttt ... ctacttacagGAATTCAAAGGCTATGTCTTCAAAATTACTGGAGGTTGCGACAAGCAAGGA
EST: gi|10709860|gb|BF009584.1|BF009584
EST:     TTTGGGACAAGAGGATCTCACAAGAGGTTGTTGGTGATGCTCTGGGTGAG                         GAATTCANAGGCTATGTCTTCAAAATTACTGGAGGTTGCGACAAGCAAGGA
genomic: TTTGGGACAAGAGGATCTCACAAGAGGTTGTTGGTGATGCTCTGGGTGAGgtatggtttt ... ctacttacagGAATTCAAAGGCTATGTCTTCAAAATTACTGGAGGTTGCGACAAGCAAGGA
EST: gi|298172139|gb|HO021731.1|HO021731
EST:     TTTGGGACAAGAGGATCTCACAAGAGGTTGTTGGTGATGCTCTGGGTGAG                         GAATTCAAAGGCTATGTCTTCAAAATTACTGGAGGTTGCGACAAGCAAGGA
genomic: TTTGGGACAAGAGGATCTCACAAGAGGTTGTTGGTGATGCTCTGGGTGAGgtatggtttt ... ctacttacagGAATTCAAAGGCTATGTCTTCAAAATTACTGGAGGTTGCGACAAGCAAGGA
EST: gi|192303339|gb|FG995633.1|FG995633
EST:     TTTGGGACAAGAGGATCTCACAAGAGGTTGTTGGTGATGCTCTGGGTGAG                         GAATTCAAAGGCTATGTCTTCAAAATTACTGGAGGTTGCGACAAGCAAGGA
genomic: TTTGGGACAAGAGGATCTCACAAGAGGTTGTTGGTGATGCTCTGGGTGAGgtatggtttt ... ctacttacagGAATTCAAAGGCTATGTCTTCAAAATTACTGGAGGTTGCGACAAGCAAGGA
EST: gi|208091029|gb|GD886666.1|GD886666
EST:     TTTGGGACAAGAGGATCTCACAAGAGGTTGTTGGCGATGCTCTGGGTGAG                         GAATTCAAAGGCTATGTCTTCAAAATT
genomic: TTTGGGACAAGAGGATCTCACAAGAGGTTGTTGGTGATGCTCTGGGTGAGgtatggtttt ... ctacttacagGAATTCAAAGGCTATGTCTTCAAAATT
EST: gi|8826310|gb|BE210040.1|BE210040
EST:     TTTGGGACAAGAGGATCTCACAAGAGGTTGTTGGTGATGCTCTGGGTGAG                         GAATTCAAAGGCTATGTCTTCAAAATTACTGGAGGTTGCGACAAGCAAGGA
genomic: TTTGGGACAAGAGGATCTCACAAGAGGTTGTTGGTGATGCTCTGGGTGAGgtatggtttt ... ctacttacagGAATTCAAAGGCTATGTCTTCAAAATTACTGGAGGTTGCGACAAGCAAGGA
EST: gi|22525238|gb|BU084049.1|BU084049
EST:     TTTGGGACAAGAGGATCTCACAAGAGGTTGTTGGTGATGCTCTGGGTGAG                         GAATTCAAAGGCTATGTCTTCAAAATTACTGGAGGTTGCGACAAGCAAGGA
genomic: TTTGGGACAAGAGGATCTCACAAGAGGTTGTTGGTGATGCTCTGGGTGAGgtatggtttt ... ctacttacagGAATTCAAAGGCTATGTCTTCAAAATTACTGGAGGTTGCGACAAGCAAGGA
EST: gi|213601201|gb|DB964680.1|DB964680
EST:     TTTGGGACAAGAGGATCTCACAAGAGGTTGTTGGTGATGCTCTGGGTGAG                         GAATTCAAAGGCTATGTCTTCAAAATTACTGGAGGTTGCGACAAGCAAGGA
genomic: TTTGGGACAAGAGGATCTCACAAGAGGTTGTTGGTGATGCTCTGGGTGAGgtatggtttt ... ctacttacagGAATTCAAAGGCTATGTCTTCAAAATTACTGGAGGTTGCGACAAGCAAGGA
EST: gi|18730661|gb|BM526007.1|BM526007
EST:     TTTGGGACAAGAGGATCTCACAAGAGGTTGTTGGTGATGCTCTGGGTGAG                         GAATTCAAAGGCTATGTCTTCAAAATTACTGGAGGTTGCGACAAGCAAGGA
genomic: TTTGGGACAAGAGGATCTCACAAGAGGTTGTTGGTGATGCTCTGGGTGAGgtatggtttt ... ctacttacagGAATTCAAAGGCTATGTCTTCAAAATTACTGGAGGTTGCGACAAGCAAGGA
EST: gi|13181588|gb|BG352928.1|BG352928
EST:     TTTGGGACAAGAGGATCTCACAAGAGGTTGTTGGTGATGCTCTGGGTGAG                         GAATTCAAAGGCTATGTCTTCAAAATTACTGGAGGTTGCGACAAGCAAGGA
genomic: TTTGGGACAAGAGGATCTCACAAGAGGTTGTTGGTGATGCTCTGGGTGAGgtatggtttt ... ctacttacagGAATTCAAAGGCTATGTCTTCAAAATTACTGGAGGTTGCGACAAGCAAGGA
EST: gi|298193972|gb|HO040620.1|HO040620
EST:     TTTGGGACAAGAGGATCTCACAAGAGGTTGTTGGTGATGCTCTGGGCGAG                         GAATTCAAAGGCTATGTCTTCAAAATTACTGGAGGTTGCGACAAGCAAGGA
genomic: TTTGGGACAAGAGGATCTCACAAGAGGTTGTTGGTGATGCTCTGGGTGAGgtatggtttt ... ctacttacagGAATTCAAAGGCTATGTCTTCAAAATTACTGGAGGTTGCGACAAGCAAGGA
EST: gi|192327154|gb|FK015546.1|FK015546
EST:     TTTGGGACAAGAGGATCTCACAAGAGGTTGTTGGTGATGCTCTGGGTGAG                         GAATTCAAAGGCTATGTCTTCAAAATTACTGGAGGTTGCGACAAGCAAGGA
genomic: TTTGGGACAAGAGGATCTCACAAGAGGTTGTTGGTGATGCTCTGGGTGAGgtatggtttt ... ctacttacagGAATTCAAAGGCTATGTCTTCAAAATTACTGGAGGTTGCGACAAGCAAGGA
EST: gi|192332916|gb|FK025013.1|FK025013
EST:     TTTGGGACAAGAGGATCTCACAAGAGGTTGTTGGTGATGCTCTGGGTGAG                         GAATTCAAAGGCTATGTCTTCAAAATTACTGGAGGTTGCGACAAGCAAGGA
genomic: TTTGGGACAAGAGGATCTCACAAGAGGTTGTTGGTGATGCTCTGGGTGAGgtatggtttt ... ctacttacagGAATTCAAAGGCTATGTCTTCAAAATTACTGGAGGTTGCGACAAGCAAGGA
EST: gi|20811812|gb|BQ296290.1|BQ296290
EST:     TTTGGGACAAGAGGATCTCACAAGAGGTTGTTGGTGATGCTCTGGGTGAG                         GAATTCAAAGGCTATGTCTTCAAAATTACTGGAGGTTGCGACAAGCAAGGA
genomic: TTTGGGACAAGAGGATCTCACAAGAGGTTGTTGGTGATGCTCTGGGTGAGgtatggtttt ... ctacttacagGAATTCAAAGGCTATGTCTTCAAAATTACTGGAGGTTGCGACAAGCAAGGA
EST: gi|4313890|gb|AI461009.1|AI461009
EST:     TTTGGGACAAGAGGATCTCACAAGAGGTTGTTGGTGATGCTCTGGGTGAG                         GAATTCAAAGGCTATGTCTTCAAAATTACTGGAGGTTGCGACAAGCAAGGA
genomic: TTTGGGACAAGAGGATCTCACAAGAGGTTGTTGGTGATGCTCTGGGTGAGgtatggtttt ... ctacttacagGAATTCAAAGGCTATGTCTTCAAAATTACTGGAGGTTGCGACAAGCAAGGA
EST: gi|5058304|gb|AI736780.1|AI736780
EST:     TTTGGGACAAGAGGATCTCACAAGAGGTTGTTGGTGATGCTCTGGGTGAG                         GAATTCAAAGGCTATGTCTTTCAAATTTACTGGAGGTTGCGACAAGCAAGG
genomic: TTTGGGACAAGAGGATCTCACAAGAGGTTGTTGGTGATGCTCTGGGTGAGgtatggtttt ... ctacttacagGAATTCAAAGGCTATGTC-TTCAAAATTACTGGAGGTTGCGACAAGCAAGG
EST: gi|6501870|gb|AW203229.1|AW203229
EST:     TTTGGGACAAGAGGATCTCACAAGAGGTTGTTGGTGATGCTCTGGGTGAG                         GAATTCAAAGGCTATGTCTTCAAAATTACTGGAGGTTGCGACAAGCAAGGA
genomic: TTTGGGACAAGAGGATCTCACAAGAGGTTGTTGGTGATGCTCTGGGTGAGgtatggtttt ... ctacttacagGAATTCAAAGGCTATGTCTTCAAAATTACTGGAGGTTGCGACAAGCAAGGA
EST: gi|6566557|gb|AW234200.1|AW234200
EST:     TTTGGGACAAGAGGATCTCACAAGAGGTTGTTGGTGATGCTCTGGGTGAG                         GAATTCAAAGGCTATGTCTTCAAAATTACTGGAGGTTGCGACAAGCAAGGA
genomic: TTTGGGACAAGAGGATCTCACAAGAGGTTGTTGGTGATGCTCTGGGTGAGgtatggtttt ... ctacttacagGAATTCAAAGGCTATGTCTTCAAAATTACTGGAGGTTGCGACAAGCAAGGA
EST: gi|18735629|gb|BM528877.1|BM528877
EST:     TTTGGGACAAGAGGATCTCACAAGAGGTTGTTGGTGATGCTCTGGGTGAG                         GAATTCAAAGGCTATGTCTTCAAAATTACTGGAGGTTGCGACAAGCAAGGA
genomic: TTTGGGACAAGAGGATCTCACAAGAGGTTGTTGGTGATGCTCTGGGTGAGgtatggtttt ... ctacttacagGAATTCAAAGGCTATGTCTTCAAAATTACTGGAGGTTGCGACAAGCAAGGA
EST: gi|193367249|gb|FK330339.1|FK330339
EST:     ATCTCACAAGAGGTTGTTGGTGATGCTCT-GGTGAG                         GAATTCAAAAGGCTATGTCTTCAAAATTACTGGAGGTTGCGACAAGCAAGG
genomic: ATCTCACAAGAGGTTGTTGGTGATGCTCTGGGTGAGgtatggtttt ... ctacttacagGAATTC-AAAGGCTATGTCTTCAAAATTACTGGAGGTTGCGACAAGCAAGG
EST: gi|17023205|gb|BM094239.1|BM094239
EST:     TTTGGGACAAGAGGATCTCACAAGAGGTTGTTGGTGATGCTCTGGGTGAG                         GAATTCAAAGGCTATGTCTTCAAAATTACTGTATGTTGCGACAAGCAAGGA
genomic: TTTGGGACAAGAGGATCTCACAAGAGGTTGTTGGTGATGCTCTGGGTGAGgtatggtttt ... ctacttacagGAATTCAAAGGCTATGTCTTCAAAATTACTGGAGGTTGCGACAAGCAAGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaaacattgatcaatgattggcttatccgtcctttcttatatttgctacttacagGAATTCAAAGGCTATGTCTTCAAAATTACTGGAGGTTGCGACAAGCAAGGATTTCCAATGAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGC
    cattgat  putative branch site (score: 4)
                                tttcttatattt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatggtttttgctggaacccttccatagtgcagagtttcctgaagttacctgagaaacattgatcaatgattggcttatccgtcctttcttatatttgctacttacagGAATTCAAAGGCTATGTCTTCAAAATTACTGGAGGTTGCGACAAGCAAGGATTTCCAATGAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAG