1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtatgtattataaaaattgaggctgttgaaatgccaaacctctttctttttcatatataaatgcattacatgtgttgtgaaaattgattgtgggttttctaattgtgatttgttttaacattagGATTTGAAAAAAAAGGAAAAGGAACTCCAAGCCAAGGAGGCTGAATTGAGAAAAAGGGAACAG
species | Glycine max |
transcript | GLYMA15G07480.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATAACTATGGCTTTGGTGCGACAGTTGATATACCTCTTGATCCATCAACG GATTTGNNNNNNNNGGAAAAGGAACTCCAAGCCAAGGAGGCTGAATTGAGAEST: gi|298183413|gb|HO028626.1|HO028626
genomic: ATAACTATGGCTTTGGTGCGACAGTTGATATACCTCTTGATCCATCAACGgtatgtatta ... ttaacattagGATTTGAAAAAAAAGGAAAAGGAACTCCAAGCCAAGGAGGCTGAATTGAGA
EST: ATAACTATGGCTTTGGTGCGACAGTTGATATACCTCTTGATCCATCAACG GATTTGNNNNNNNNGGAAAAGGAACTCCAAGCCAAGGAGGCTGAATTGAGAEST: gi|38192157|gb|CF921363.1|CF921363
genomic: ATAACTATGGCTTTGGTGCGACAGTTGATATACCTCTTGATCCATCAACGgtatgtatta ... ttaacattagGATTTGAAAAAAAAGGAAAAGGAACTCCAAGCCAAGGAGGCTGAATTGAGA
EST: ATAACTATGGCTTTGGTGCGACAGTTGATATACCTCTTGATCCATCAACG GATTTGNNNNNNNNGGAAAAGGAACTCCAAGCCAAGGAGGCTGAATTGAGA
genomic: ATAACTATGGCTTTGGTGCGACAGTTGATATACCTCTTGATCCATCAACGgtatgtatta ... ttaacattagGATTTGAAAAAAAAGGAAAAGGAACTCCAAGCCAAGGAGGCTGAATTGAGA
atgtgttgtgaaaattgattgtgggttttctaattgtgatttgttttaacattagGATTTGAAAAAAAAGGAAAAGGAACTCCAAGCCAAGGAGGCTGAATTGAGAAAAAGGGAACAG
ttttaac putative branch site (score: 2)
tttgtttt CT-rich tract
atttgttttaacatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtattataaaaattgaggctgttgaaatgccaaacctctttctttttcatatataaatgcattacatgtgttgtgaaaattgattgtgggttttctaattgtgatttgttttaacattagGATTTGAAAAAAAAGGAAAAGGAACTCCAAGCCAAGGAGGCTGAATTGAGAAAAAGGGAACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG