Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacttgtgagttgacaataaattattctagttttgcctaaaattttgtttctctgtagctagtgatttagatatgctctattttattcagTCCACAATGCCTTCAACTTTTAAGCACCCGGCTCGTGTGCCAATGTGGAAAGGAGCCAAGGTTGCTTATTTCTTCATTGCAATGTGCCTCTTCCCTATTG

Basic information

species Glycine max
transcript GLYMA15G07440.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208077803|gb|GD874803.1|GD874803
EST:     GAATTATAGCCTTTTCTTTCAGAGGCCACAATTTGGCCCTAGAAATTCAG                         TCCACAATGCCTTCAACTTTTAAGCACCCGGCTCGTGTGCCAATGTGGAAA
genomic: GAATTATAGCCTTTTCTTTCAGAGGCCACAATTTGGCCCTAGAAATTCAGgtacttgtga ... ttttattcagTCCACAATGCCTTCAACTTTTAAGCACCCGGCTCGTGTGCCAATGTGGAAA
EST: gi|192298609|gb|FG989255.1|FG989255
EST:     GAATTATAGCCTTTTCTTTCAGAGGCCACAATTTGGCCCTAGAAATTCAG                         TCCACAATGCCTTCAACTTTTAAGCACCCGGCTCGTGTGCCAATGTGGAAA
genomic: GAATTATAGCCTTTTCTTTCAGAGGCCACAATTTGGCCCTAGAAATTCAGgtacttgtga ... ttttattcagTCCACAATGCCTTCAACTTTTAAGCACCCGGCTCGTGTGCCAATGTGGAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cctaaaattttgtttctctgtagctagtgatttagatatgctctattttattcagTCCACAATGCCTTCAACTTTTAAGCACCCGGCTCGTGTGCCAATGTGGAAAGGAGCCAAGGTTGCTTATTTCTTCATTGCAATGTGCCTCTTCCCTATTG
 gcctaaa  putative branch site (score: 3)
                                        ctctatttt  putative PPT
                                         tctattttatt  TA-rich tract