1 5' 3' | 2 5' 3' | 3 5' 3' |
...tttcctagccctatatctttatattatccttcatatataattgcatcatcattcagggcttttaatgtgataataatgaactatctttggccatgtttagGGAATGTTGCTGGACCTTTTAGCGGCAATTGGTGTCATTCAATCTCGTCATTTGCGGTTAGATGTGGAGCACATTGAGGAAGCAATGCAGAATATTTTGG
species | Glycine max |
transcript | GLYMA15G07390.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AAATTCTTGTGCATCAAAGGAATTGTTTTCTTCTGCTTTTGGCAG GGAATGTTGCTGGAGCTTTTAGCGGCAACTGGTGTCATTCAATCTCGCCATEST: gi|208083979|gb|GD884475.1|GD884475
genomic: AAATTCTTGTGCATCAAAGGAATTGTTTTCTTCTGCTTTTGGCAGgtaaactcat ... ccatgtttagGGAATGTTGCTGGACCTTTTAGCGGCAATTGGTGTCATTCAATCTCGTCAT
EST: CGAAATTCTTGTGCATCAAAGGAATTGTTTTCTTCTGCTTTTGGCAG GGAATGTTGCTGGACCTTTTAGCGGCAATTGGTGTCATTCAATCTCGTCATEST: gi|193315498|gb|FK280206.1|FK280206
genomic: CGAAATTCTTGTGCATCAAAGGAATTGTTTTCTTCTGCTTTTGGCAGgtaaactcat ... ccatgtttagGGAATGTTGCTGGACCTTTTAGCGGCAATTGGTGTCATTCAATCTCGTCAT
EST: TAGCGAAATTCTTGTGCATCAAAGGAATTGTTTTCTTCTGCTTTTGGCAG GGAATGTTGCTGGACCTTTTAGCGGCAATTGGTGTCATTCAATCTCGTCAT
genomic: TAGCGAAATTCTTGTGCATCAAAGGAATTGTTTTCTTCTGCTTTTGGCAGgtaaactcat ... ccatgtttagGGAATGTTGCTGGACCTTTTAGCGGCAATTGGTGTCATTCAATCTCGTCAT
tcatcattcagggcttttaatgtgataataatgaactatctttggccatgtttagGGAATGTTGCTGGACCTTTTAGCGGCAATTGGTGTCATTCAATCTCGTCATTTGCGGTTAGATGTGGAGCACATTGAGGAAGCAATGCAGAATATTTTGG
ttttaat putative branch site (score: 3)
ttttaatgtgataata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttcctagccctatatctttatattatccttcatatataattgcatcatcattcagggcttttaatgtgataataatgaactatctttggccatgtttagGGAATGTTGCTGGACCTTTTAGCGGCAATTGGTGTCATTCAATCTCGTCATTTGCGGTTAGATGTGGAGCACATTGAGGAAGCAATGCAGAATATTTTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - ctagccc
- - - - - - - - - - - - - tccttca
- - - - - - - - - - - - - - - - - - - - ttgcatc
- - - - - - - - - - - - - - - - - - - - - - - - tcattca