1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ccatgtaacctgtgcattctaaaatacttttgcactggttcacttttgatgtctccattaattgtttttcttaatctgacaaatattgcacatttagtagGTTGTAAATGGTCTTCTCCAAAGAGAGGATTGGGATACGGCAATAAAGATGCCCCTTGGGGTAGTTCCTGCAG
species | Glycine max |
transcript | GLYMA15G07340.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTAAATACGATGGGATTGTTTGTGTTAGTGGAGATGGAATTTTGGTTGAG GTTGTAAATGGTCTTCTCCAAAGAGAGGATTGGGATACGGCAATAAAGATGEST: gi|15202824|gb|BI425602.1|BI425602
genomic: CTAAATACGATGGGATTGTTTGTGTTAGTGGAGATGGAATTTTGGTTGAGgttagcttca ... catttagtagGTTGTAAATGGTCTTCTCCAAAGAGAGGATTGGGATACGGCAATAAAGATG
EST: CTAAATACGATGGGATTGTTTGTGTTAGTGGAGATGGAATTTTGGTTGAG GTTGTAAATGGTCTTCTCCAAAGAGAGGATTGGGATACGGCAATAAAGATG
genomic: CTAAATACGATGGGATTGTTTGTGTTAGTGGAGATGGAATTTTGGTTGAGgttagcttca ... catttagtagGTTGTAAATGGTCTTCTCCAAAGAGAGGATTGGGATACGGCAATAAAGATG
ttgatgtctccattaattgtttttcttaatctgacaaatattgcacatttagtagGTTGTAAATGGTCTTCTCCAAAGAGAGGATTGGGATACGGCAATAAAGATGCCCCTTGGGGTAGTTCCTGCAG
atctgac putative branch site (score: 3)
attaattgtttttctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccatgtaacctgtgcattctaaaatacttttgcactggttcacttttgatgtctccattaattgtttttcttaatctgacaaatattgcacatttagtagGTTGTAAATGGTCTTCTCCAAAGAGAGGATTGGGATACGGCAATAAAGATGCCCCTTGGGGTAGTTCCTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
ccatgta
- - - - - - -gcattct
- - - - - - - - - - - - - - - tgcactg
- - - - - - - - - - - - - - - - - - - - - - - tgatgtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - ccattaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tctgaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tattgca