1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...aaatattttaccataaactccttcttttcaatttttccaaactagtttggggactgacctctacattggtgaattataataattcaatttgaaatggcagGTTAACCTACTACTGACTAAGTGGATGAAAGAGCTTGAGAAGATTTTTTATGGGAACATTGTTGCTTATGATACTGCCATACTTCTGGAAGCTAAACCGG
species | Glycine max |
transcript | GLYMA15G06170.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TTTATGAGATTTACAATCACGATGTGGAGCTAAGAGTGTCCAAAGCTGGA GTTAACCTACTACTGACTAAGTGGATGAAAGAGCTTGAGAAGATTTTTTATEST: gi|151408835|gb|EV278643.1|EV278643
genomic: TTTATGAGATTTACAATCACGATGTGGAGCTAAGAGTGTCCAAAGCTGGAgtaagtagtc ... gaaatggcagGTTAACCTACTACTGACTAAGTGGATGAAAGAGCTTGAGAAGATTTTTTAT
EST: TTTATGAGATTTACAATCACGATGTGGAGCTAAGAGTGTCCAAAGCTGGA GTTAACCTACTACTGACTAAGTGGATGAAAGAGCTTGAGAAGATTTTTTATEST: gi|193489286|gb|FK457193.1|FK457193
genomic: TTTATGAGATTTACAATCACGATGTGGAGCTAAGAGTGTCCAAAGCTGGAgtaagtagtc ... gaaatggcagGTTAACCTACTACTGACTAAGTGGATGAAAGAGCTTGAGAAGATTTTTTAT
EST: TTTATGAGATTTACAATCACGATGTGGAGCTAAGAGTGTCCAAAGCTGGA GGTTAACCTACTACTGACTAAGTGGATGA
genomic: TTTATGAGATTTACAATCACGATGTGGAGCTAAGAGTGTCCAAAGCTGGAgtaagtagtc ... gaaatggcagG-TTAACCTACTACTGACTAAGTGGATGA
tttggggactgacctctacattggtgaattataataattcaatttgaaatggcagGTTAACCTACTACTGACTAAGTGGATGAAAGAGCTTGAGAAGATTTTTTATGGGAACATTGTTGCTTATGATACTGCCATACTTCTGGAAGCTAAACCGG
gactgac putative branch site (score: 2)
tgaattataataattc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaatattttaccataaactccttcttttcaatttttccaaactagtttggggactgacctctacattggtgaattataataattcaatttgaaatggcagGTTAACCTACTACTGACTAAGTGGATGAAAGAGCTTGAGAAGATTTTTTATGGGAACATTGTTGCTTATGATACTGCCATACTTCTGGAAGCTAAACCGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - -ctccttc
- - - - - - - - - - - - - - - - - - ccaaact
- - - - - - - - - - - - - - - - - - - - - - -tttgggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - attggtg