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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...attccacacgtacaagagtgggatatacatgcatttctacattaattatgaccagcattatttccttattggtttgtcttgttatgttggtattaaacagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACGGTGCCCATATATGAAGGGTATGCTCTTCCTCATGCAATTCTTCGGTTGGACCTTGCTGGCCG

Basic information

species Glycine max
transcript GLYMA15G05570.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G05570.1 (Glycine max), 3'ss of exon 3
lower sequence: LOC_Os03g61970.1 (Oryza sativa), 3'ss of exon 3
attccacacgtacaagagtgggatatacatgcatttctacattaat-tatgaccagcattatttccttattggt----ttgtcttgttatgttg-gtattaaacagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACGGTGCCCATATATGAAGGGTATGCTCTTCCTCATGCAATTCTTCGGTTGGACCTTGCTGGCCG
            || | ||    | |  |  |  ||| | || | | | ||  ||     || || | ||||||    |   |    |  |||| |  ||   |||||||||||||||||||||||||||||||||  ||||| ||||| || |||||||| ||||| ||||||||||| |||||||||||||| |||||||| ||
-----------gcatgtgtccattttcta--ctattcaaaatgagtctttgtacacttacatctcttcattggtgatatgaccccagtgcgttgtggcttgtgcagGTATTGTGCTTGATTCTGGTGATGGTGTGACTCACACAGTGCCAATCTATGAAGGATATGCACTTCCTCATGCTATTCTTCGGTTGGATCTTGCTGGTCG

upper sequence: GLYMA15G05570.1 (Glycine max), 3'ss of exon 3
lower sequence: LOC_Os05g01600.2 (Oryza sativa), 3'ss of exon 3
attccacacgtacaagagtgggatatacatgcatttctacattaattatgaccagca--ttatttccttattggtttgtcttgttatgttggtattaaacagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACGGTGCCCATATATGAAGGGTATGCTCTTCCTCATGCAATTCTTCGGTTGGACCTTGCTGGCCG
       || | | |        | | || || |    | |    | |    |  ||  | | |   |||||     |   |  | | |   |  |   |||||||||| |||||||||||||||||||| |||||||| |||||||| |||||||| ||||| ||||||||||| ||||| || ||||| || ||||| ||
--aagctacctgcgaccccattgtgtccaggcctgaacaaacagctaactgtcgacaagtaaatgttttatttagaggagcttatgtttctctgctctgcagGTATTGTTCTTGATTCTGGTGATGGTGTCAGCCACACAGTGCCCATTTATGAAGGATATGCGCTTCCTCATGCCATTCTCCGTTTGGATCTGGCTGGTCG

upper sequence: GLYMA15G05570.1 (Glycine max), 3'ss of exon 3
lower sequence: LOC_Os05g36290.2 (Oryza sativa), 3'ss of exon 3
attccacacgtacaagagtgggatatacatgcatttctacattaattatgaccagcattatttccttattggtttgtcttgttatgttggtattaaacagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACGGTGCCCATATATGAAGGGTATGCTCTTCCTCATGCAATTCTTCGGTTGGACCTTGCTGGCCG
                 ||  ||| ||  | | |||  | ||  ||  ||   |   | | |   ||   ||   ||     |   ||  | |    ||||||| |||||||| ||||||||||||||||||||||| || || ||||||||||| ||| | ||||||||||| || || |||||||| |||||||||||
-----------------gtatgat-tat-tacctttgca-atagatcgtgttaaaattcaatgtgttggggggcagtgacacttcttttatct---gcagGTATCGTGCTTGACTCTGGTGATGGTGTGAGCCACACTGTTCCAATATATGAAGGATATACGCTTCCTCATGCTATCCTCCGGTTGGATCTTGCTGGCCG

upper sequence: GLYMA15G05570.1 (Glycine max), 3'ss of exon 3
lower sequence: LOC_Os01g73310.1 (Oryza sativa), 3'ss of exon 3
attccacacgtacaagagtgggat-atacatgcatttctacattaattatgaccagcattatttccttattggtttgtcttgtta-tgttggtatta--aacagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACGGTGCCCATATATGAAGGGTATGCTCTTCCTCATGCAATTCTTCGGTTGGACCTTGCTGGCCG
  ||   | ||   ||| |   || ||  ||||   || | | || |  || | |  |||   |  |  |  ||   | | | || || || | | |  |||||||||||| || || || ||||||||||||||||| || || ||||| |||||||| ||||| |||||||||||||| |||||  |||| |||||||||||
ggtcagtaggtgttagaattatattatctatgc---tcaataatagtcgtg-caattatttaatgttggtcagtgcatatggctaatgctgttttaatcaacagGTATTGTTCTGGACTCGGGTGATGGTGTGAGCCATACTGTTCCCATCTATGAAGGATATGCACTTCCTCATGCAATCCTTCGTCTGGATCTTGCTGGCCG

upper sequence: GLYMA15G05570.1 (Glycine max), 3'ss of exon 3
lower sequence: LOC_Os11g06390.6 (Oryza sativa), 3'ss of exon 3
attccacacgtacaagagtgggatatacatgcatttctacattaattatgaccagcattatttccttattggtttgtcttgttatgttggtattaa-acagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACGGTGCCCATATATGAAGGGTATGCTCTTCCTCATGCAATTCTTCGGTTGGACCTTGCTGGCCG
                         ||    |      ||||   ||  ||     |  |  |  | | |  ||  || ||   ||||| | || |  ||||||| ||| | || |||||||||||||| |||||||| ||||| || |||||||| ||||| ||||||||||| || || ||  ||||||||||||| ||
------------------------gtaataactcactcacat-ggttgagagttttaaaaaatattcact--ttattcatgaactgttgctcttgatgcagGTATCGTGTTGGACTCTGGTGATGGTGTCAGCCACACCGTGCCAATCTATGAAGGATATGCCCTTCCTCATGCCATCCTGCGTCTGGACCTTGCTGGGCG

upper sequence: GLYMA15G05570.1 (Glycine max), 3'ss of exon 3
lower sequence: LOC_Os01g64630.1 (Oryza sativa), 3'ss of exon 3
-----------attccacacgtacaagagtgggatatacatgcatttctacattaattatgaccagcattatttccttattggtttgtct-tgttatgttggtattaaa--cagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACGGTGCCCATATATGAAGGGTATGCTCTTCCTCATGCAATTCTTCGGTTGGACCTTGCTGGCCG
             |  |||   | ||   |  ||| |  |   | || |  |  ||  ||       | |||    | | | ||    ||  | ||  | | |  ||||  |||||||||| ||||| |||||||||||||| || ||||| || || ||||| ||||| | | | || || ||||| ||||||||  | || |||||||| ||
gtatgatgattgctgtacaaaaaaaaccatttgattttaacatacttatctaaaaaaaattgattttaatatccaatgagtagtcgaactgcgctaactagtttataaatgcagGTATTGTACTTGACTCTGGTGATGGTGTAAGTCACACTGTTCCAATATACGAAGGATTTACACTCCCGCATGCTATTCTTCGACTCGATCTTGCTGGGCG

upper sequence: GLYMA15G05570.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G067985_T13 (Zea mays), 3'ss of exon 3
attccacacgtacaagagtgggatatacatgcatttctacattaattatga--ccagcattatttccttattggtttgtcttgtt-atgttggtattaaacagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACGGTGCCCATATATGAAGGGTATGCTCTTCCTCATGCAATTCTTCGGTTGGACCTTGCTGGCCG
       |  ||    |||   |  ||  ||  |   |    |   |       |  | || | |  || ||   || ||||||| |  ||   | |  ||||||||||| || || ||||||||||||||||||||||| |||||||| || ||||| ||||| ||||||||||| |||||||| ||||| |||||||| ||
---aataaaatatggaagttaaacttaattgtttacatggtgtggctgaagtttcctctttttcttttttttcccttatcttgtttactttctcaatctacagGTATTGTACTCGACTCTGGTGATGGTGTGAGCCACACTGTGCCCATTTACGAAGGATATGCCCTTCCTCATGCCATTCTTCGTTTGGATCTTGCTGGTCG

upper sequence: GLYMA15G05570.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G067985_T03 (Zea mays), 3'ss of exon 2
-------attccacacgtacaagagtgggatatacatgcatttctacattaattatgaccagcattatttccttattggtttgtcttgttatgttggtattaaacagGTATTGTGCTT-GATTCTGGTGATGGTGTGAGCCACACGGTGCCCATATATGAAGGGTATGCTCTTCCTCATGCAATTCTTCGGTTGGACCTTGCTGGCCG
        |   | |  | ||||| |   ||| |   | | ||  |  |||||| |      |||  | |   |  || ||  |||| || | ||   | |   |||||||||| ||| || ||||||||||||||||||||||| |||||||| || ||||| ||||| ||||||||||| |||||||| ||||| |||||||| | 
aaaatgagtataatatat-caagaataa-ata-atgggaagttaaaacttaattgt---ttacatggtgtggctggtgtttcctcttttttt-ttctcaatcttcagGTATTGTTCTTTGACTCTGGTGATGGTGTGAGCCACACTGTGCCCATTTACGAAGGATATGCCCTTCCTCATGCCATTCTTCGTTTGGATCTTGCTGGTC-

upper sequence: GLYMA15G05570.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G104017_T01 (Zea mays), 3'ss of exon 3
---attcca-cacgtacaagagtgggatatacatgcatttctacattaattatgaccagcattatttccttattggtttgtcttgttatgttggtattaaacagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACGGTGCCCATATATGAAGGGTATGCTCTTCCTCATGCAATTCTTCGGTTGGACCTTGCTGGCCG
   ||  || |  ||| |  |     | ||| | | |  || | |||| || |      ||   | |   |   | ||  |||| || | ||   | |  ||||||||||| || ||||||||||||||||||||||| || |||||||| |||||||| ||||| ||||||||||| ||||| ||  |||| |||||||| ||
agtatctcagctagtataccaagaataaata-acggaagtcaaaattagttgt---ttacacggtgtgactgaagtttcctctttttttattctcaatctacagGTATTGTTCTCGATTCTGGTGATGGTGTGAGCCATACTGTGCCCATTTATGAAGGATATGCCCTTCCTCATGCTATTCTACGTCTGGATCTTGCTGGTCG

upper sequence: GLYMA15G05570.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G437445_T01 (Zea mays), 3'ss of exon 4
attccacacgtacaagagtgggatatacatgcatttctacattaattatgac---cagcattatttccttattggtttgtcttgttatgttggtattaa-acagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACGGTGCCCATATATGAAGGGTATGCTCTTCCTCATGCAATTCTTCGGTTGGACCTTGCTGGCCG
                             |   || || |||||| | ||      | ||  |||    || | || |     || ||     | ||    ||||||||||||| || ||||||||||||||||||||||| || || || || ||||||||  | ||||||||||| |||||||| |||||||||||||| | 
----------------------------gtatgttactgcattaaatctgtttcatatcagcattcaaataatagtgtagtcagtgataggaatctttctgcagGTATTGTGCTCGACTCTGGTGATGGTGTGAGCCACACCGTCCCTATCTACGAAGGGTACACGCTTCCTCATGCTATTCTTCGATTGGACCTTGCTGGTCA

upper sequence: GLYMA15G05570.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G067985_T05 (Zea mays), 3'ss of exon 4
attccacacgtacaagagtgggatatacatgcatttctacattaattatgaccagcattatttccttattggtttgtcttgttatgttggtattaaacagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACGGTGCCCATATATGAAGGGTATGCTCTTCCTCATGCAATTCTTCGGTTGGACCTTGCTGGCCG-----------
                                                                                                              ||| ||||||||||||||||||||||| |||||||| || ||||| ||||| ||||||||||| |||||||| ||||| |||||||| ||           
--------------------------------------------------------------------------------------------------------------tGACTCTGGTGATGGTGTGAGCCACACTGTGCCCATTTACGAAGGATATGCCCTTCCTCATGCCATTCTTCGTTTGGATCTTGCTGGTCGGGACCTCACAG

upper sequence: GLYMA15G05570.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G110378_T03 (Zea mays), 3'ss of exon 4
--attccacacg-tacaagagtgggatatacatgcatttctacattaattatgaccagcattatttccttattggttt-gtcttgttatgttggtattaaacagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACGGTGCCCATATATGAAGGGTATGCTCTTCCTCATGCAATTCTTCGGTTGGACCTTGCTGGCCG
  | |   ||   ||||  | |   | | |   | | ||  |||| |||| |      |||  | |   |  || ||  |  || |||| ||   | |  ||||||||||| || || ||||||||||||||||| ||||| |||||||| |||||||| ||||| ||||| ||||| ||||||||  |||| |||||||| ||
aaaataagcataatacatcaataataaacaatggaagttaaacat-aattgt---ttacatggtgtggctgatgtttccgcttttttattttctcaatctacagGTATTGTTCTCGACTCTGGTGATGGTGTGAGTCACACTGTGCCCATTTATGAAGGATATGCCCTTCCCCATGCCATTCTTCGTCTGGATCTTGCTGGTCG

upper sequence: GLYMA15G05570.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G053299_T01 (Zea mays), 3'ss of exon 3
------------attccacacgtacaagagt------gggata---tacatgcatttctacattaattatg-accagcattatttccttattggtttgtcttgttatgttggtattaaacagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACGGTGCCCATATATGAAGGGTATGCTCTTCCTCATGCAATTCTTCGGTTGGACCTTGCTGGCCG
             |||  | | ||  | |||       ||| |   |   ||  | ||  ||||  | ||    |  ||  |||    ||    | ||||| | ||   ||    |   ||||||||||||| ||||||||||||||||||| |||||| ||||| || || || || || || || |||||||| |||||| || |||| |||||||||||
gcacgtgtccactttcacctcttattaaagtttttctaggacaacgtctctgattctcgtcattggtgatctgacgacaccattctactacc--tatgtctcggtactctg----tgtgcagGTATTGTGCTCGATTCTGGTGATGGTGTGACCCACACCGTGCCAATCTACGAGGGATACGCGCTCCCTCATGCCATTCTTAGGCTGGATCTTGCTGGCCG

upper sequence: GLYMA15G05570.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G126010_T01 (Zea mays), 3'ss of exon 3
-----attccacacgtacaagagtgggatat--acatgcatttctacattaattatgaccagcattatttccttattggtttgtcttgttatgttggtat-taaacagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACGGTGCCCATATATGAAGGGTATGCTCTTCCTCATGCAATTCTTCGGTTGGACCTTGCTGGCCG
     ||  |   ||    |||     |||   | ||||| | | |   | ||    ||   |   | | |      ||| | | |||| |  |   | | |   ||||||||||| | ||||| ||||||||||||||||||||||| || || |||||||| ||  | ||||||||||| ||||| || ||||| ||||| || ||
gtaagatggctgtcgcctcagatatatatagtgatatgcactacaaagatcatacatacatacggcaatcctgacacggtctct-ttgtcaaatatctctgtgtgcagGTATTGTGATGGATTCCGGTGATGGTGTGAGCCACACGGTTCCAATCTATGAAGGATACACACTTCCTCATGCTATTCTCCGTTTGGATCTTGCGGGGCG

upper sequence: GLYMA15G05570.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G053284_T01 (Zea mays), 3'ss of exon 3
attccacacgtacaagagtgggatatacatgcatttctacattaattatgaccagcattatttccttattggtttgtcttgttatgttggtattaaacagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACGGTGCCCATATATGAAGGGTATGCTCTTCCTCATGCAATTCTTCGGTTGGACCTTGCTGGCCG
 | |   ||||    |  | | |  |   | ||| ||  ||||      ||  |||| ||  |   || ||  | |      | | |  ||      ||||||||||||| || |||||||| || ||||||||||| || ||||| || ||||||||  | ||||||||||| ||| |||| ||||||||||| || ||
gtacgttacgttgctgcatcgaacctgttt-catgtcagcatt-----cgaatagcagtacgtg--tagtgagtggcgacaatctttctgtg-----cagGTATTGTGCTCGACTCTGGTGACGGCGTGAGCCACACTGTCCCCATCTACGAAGGGTACACGCTTCCTCATGCTATTATTCGATTGGACCTTGCCGGTCG

upper sequence: GLYMA15G05570.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G006765_T02 (Zea mays), 3'ss of exon 3
attccacacgtacaagagtgggatatacatgcatttctacattaattatgaccagcattatttccttattggtttgtcttgttatgttggt-attaaacagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACGGTGCCCATATATGAAGGGTATGCTCTTCCTCATGCAATTCTTCGGTTGGACCTTGCTGGCCG
         ||| | || | |  |  |||||     | |  || |||| |||   ||  |||| |  ||   ||  |  ||   || || | || |  ||||||||||  | || |||||||||||||| |||||||| ||||| || |||||||| ||||| ||||||||||| || || ||  | ||||||||||| ||
---------gta-atgactcg--ttcacatggcgaccaaatttcattaggacttacaa-attttcccatc--ttaattatgggttgctgttcatcattcagGTATTGTATTGGACTCTGGTGATGGTGTCAGCCACACAGTGCCAATCTATGAAGGTTATGCCCTTCCTCATGCCATCCTGCGCCTTGACCTTGCTGGGCG

upper sequence: GLYMA15G05570.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G126190_T02 (Zea mays), 3'ss of exon 3
attccacacgtacaagagtgggatatacatgcatttctacattaattatgaccagcattatttccttattggtttgtcttgttatgttggtattaaacagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACGGTGCCCATATATGAAGGGTATGCTCTTCCTCATGCAATTCTTCGGTTGGACCTTGCTGGCCG
             ||   |    || |||||     | |  || |||| |||   |   ||||    ||   |   |  ||   || || |  |   ||||||||||| | || |||||||||||||| |||||||| ||||| || || ||||| ||||| ||||||||||| || || ||  | ||||||||||| ||
-----------gtaatgattcttta-acatggtgaccaaatttcattaggacttcccaaatttttccatc--tcaattatggattgctgttcctt--cagGTATTGTGTTGGACTCTGGTGATGGTGTCAGCCACACCGTGCCAATCTACGAAGGTTATGCCCTTCCTCATGCCATCCTGCGTCTTGACCTTGCTGGGCG

upper sequence: GLYMA15G05570.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G082484_T01 (Zea mays), 3'ss of exon 3
attccacacgtacaagagtgggatatacatgcattt--ctacattaattatgaccagcattatttccttattggtttgtcttgttatgttggtattaaacagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACGGTGCCCATATATGAAGGGTATGCTCTTCCTCATGCAATTCTTCGGTTGGACCTTGCTGGCCG
 | |  ||   |  | |  |||||| | ||| ||     ||  ||  || | |      | | || || | ||     |    || ||||    || | |||||||||| || |||||||| || ||||| |||||||| || || || |||||||| ||||| || || ||||| ||||||||  | || ||||||||  |
-tgctgcataaatgatatggggatagaaatggatagaaatattttcctttttatttcactcagttgctcaatgcacattgggattttgttttggttga-cagGTATTGTCCTGGATTCTGGAGACGGTGTCAGCCACACTGTCCCAATCTATGAAGGCTATGCCCTCCCGCATGCCATTCTTCGTCTCGATCTTGCTGGTAG

upper sequence: GLYMA15G05570.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv12s0178g00200.t01 (Vitis vinifera), 3'ss of exon 2
--attccacacgtacaagagtgggatatacatgcatttctacattaattatgaccagcattatttccttattggtttgtcttgttatgttggtat-taaacagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACGGTGCCCATATATGAAGGGTATGCTCTTCCTCATGCAATTCTTCGGTTGGACCTTGCTGGCCG
  ||| ||    |       |  | |||   |   |  | ||  | ||| |  |      | ||   |  |   |||       | | ||||| | | || |||||||||  | ||||||||||||||||| ||||| || ||||| || |||||||| ||||||||||| |||||||| ||||| || ||||||||||| ||
aaatttcaagaattttttcctcag-tattggtaactgccgactatgatttt--cttatcctgttctttgttatatttactgaagttttttggtgtgtgaaaagGTATTGTCTTGGATTCTGGTGATGGTGTCAGCCATACAGTGCCAATCTATGAAGGATATGCTCTTCCACATGCAATCCTTCGATTAGACCTTGCTGGTCG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254346739|gb|GR856461.1|GR856461
EST:     TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGACGTACTACAG                         GTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACGGTGCCCATATATG
genomic: TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGACGTACTACAGgtttgtttct ... tattaaacagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACGGTGCCCATATATG
EST: gi|208125899|gb|GD921615.1|GD921615
EST:     TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGACGTACTACAG                         GTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACGGTGTCCATATATG
genomic: TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGACGTACTACAGgtttgtttct ... tattaaacagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACGGTGCCCATATATG
EST: gi|19934985|gb|BQ080015.1|BQ080015
EST:     AGTGGACGTACTACAG                         GTATTGTGCTTGATATCTGGTGATGGTGTGAGCCACACGGTGCCCATATAT
genomic: AGTGGACGTACTACAGgtttgtttct ... tattaaacagGTATTGTGCTTGAT-TCTGGTGATGGTGTGAGCCACACGGTGCCCATATAT
EST: gi|6200793|gb|AW152893.1|AW152893
EST:     TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGACGTACTACAG                         GTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACGGTGCCCATATATG
genomic: TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGACGTACTACAGgtttgtttct ... tattaaacagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACGGTGCCCATATATG
EST: gi|254320935|gb|GR827384.1|GR827384
EST:     TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGACGTACTACAG                         GTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACGGTGCCCATATATG
genomic: TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGACGTACTACAGgtttgtttct ... tattaaacagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACGGTGCCCATATATG
EST: gi|213587815|gb|DB959639.1|DB959639
EST:     TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGACGTACTACAG                         GTATTGTGCTTGATTCTG
genomic: TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGACGTACTACAGgtttgtttct ... tattaaacagGTATTGTGCTTGATTCTG
EST: gi|120491933|gb|EH220100.1|EH220100
EST:     TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGACGTACTACAG                         GTATTGTGCTTGATTCTGGAGATGGTGTGAGCCACACGGCGCCCATATATG
genomic: TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGACGTACTACAGgtttgtttct ... tattaaacagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACGGTGCCCATATATG
EST: gi|213587938|gb|DB971427.1|DB971427
EST:     TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGACGTACTACAG                         GTATTGTGCTTGATTCTNGGTGATGGTGTGAGCCACACGGTGCCCATATAT
genomic: TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGACGTACTACAGgtttgtttct ... tattaaacagGTATTGTGCTTGATTCT-GGTGATGGTGTGAGCCACACGGTGCCCATATAT
EST: gi|213598434|gb|DB958102.1|DB958102
EST:     TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGACGTACTACAG                         GTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACGGTGCCCATATATG
genomic: TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGACGTACTACAGgtttgtttct ... tattaaacagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACGGTGCCCATATATG
EST: gi|8404202|gb|BE059836.1|BE059836
EST:     TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGACGTACTACAG                         GTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACGGTGCCCATATATG
genomic: TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGACGTACTACAGgtttgtttct ... tattaaacagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACGGTGCCCATATATG
EST: gi|213608166|gb|DB970805.1|DB970805
EST:     TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGACGTACTACAG                         GTATTGTGCTTG
genomic: TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGACGTACTACAGgtttgtttct ... tattaaacagGTATTGTGCTTG
EST: gi|9987247|gb|BE661355.1|BE661355
EST:     TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGACGTACTACAG                         GTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACGGTGCCCATATATG
genomic: TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGACGTACTACAGgtttgtttct ... tattaaacagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACGGTGCCCATATATG
EST: gi|18730463|gb|BM525891.1|BM525891
EST:     TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGACGTACTACAG                         GTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACGGTGCCCATATATG
genomic: TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGACGTACTACAGgtttgtttct ... tattaaacagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACGGTGCCCATATATG
EST: gi|120530325|gb|EH258458.1|EH258458
EST:     TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGACGTACTACAG                         GTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACGGTGCCCATATATG
genomic: TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGACGTACTACAGgtttgtttct ... tattaaacagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACGGTGCCCATATATG
EST: gi|298189975|gb|HO031640.1|HO031640
EST:     TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGACATACTACAG                         GTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACGGTGCCCATATA
genomic: TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGACGTACTACAGgtttgtttct ... tattaaacagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACGGTGCCCATATA
EST: gi|7588704|gb|AW704494.1|AW704494
EST:     TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCACTGGACGTACTACAT                         GTATTGTGCTTGATACTGGTGATGGTGAGAGCCACAC
genomic: TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGACGTACTACAGgtttgtttct ... tattaaacagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACAC
EST: gi|9819598|gb|BE555111.1|BE555111
EST:     TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGACGTACTACAG                         GTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACGGTGCCCATATATG
genomic: TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGACGTACTACAGgtttgtttct ... tattaaacagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACGGTGCCCATATATG
EST: gi|7283862|gb|AW596464.1|AW596464
EST:     TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGACGTACTACAN                         GTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACNGTGCCCATATATG
genomic: TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGACGTACTACAGgtttgtttct ... tattaaacagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACGGTGCCCATATATG
EST: gi|5175444|gb|AI759777.1|AI759777
EST:     TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGACGTACTACAG                         GTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACGGTGCCCATATATG
genomic: TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGACGTACTACAGgtttgtttct ... tattaaacagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACGGTGCCCATATATG
EST: gi|21601540|gb|BQ611871.1|BQ611871
EST:     TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGACGTACTACAG                         GTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACGGTGCCCATATATG
genomic: TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGACGTACTACAGgtttgtttct ... tattaaacagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACGGTGCCCATATATG
EST: gi|213599641|gb|DB968375.1|DB968375
EST:     TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGACGTACTACAG                         GTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACGGTGCCCATATATG
genomic: TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGACGTACTACAGgtttgtttct ... tattaaacagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACGGTGCCCATATATG
EST: gi|209713447|gb|BW681488.1|BW681488
EST:     TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGACGTACTACAG                         GTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACGGTGCCCATATATG
genomic: TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGACGTACTACAGgtttgtttct ... tattaaacagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACGGTGCCCATATATG
EST: gi|6502270|gb|AW203643.1|AW203643
EST:     TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGACGTACTACAG                         GTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACNGTGCCCATATATG
genomic: TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGACGTACTACAGgtttgtttct ... tattaaacagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACGGTGCCCATATATG
EST: gi|213620362|gb|DB961507.1|DB961507
EST:     TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGACGTACTACAG                         GTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACGGTGCCCATATATG
genomic: TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGACGTACTACAGgtttgtttct ... tattaaacagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACGGTGCCCATATATG
EST: gi|33390056|gb|CA853263.1|CA853263
EST:     TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGACGTACTACAG                         GTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACGGTGCCCATATATG
genomic: TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGACGTACTACAGgtttgtttct ... tattaaacagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACGGTGCCCATATATG
EST: gi|7285594|gb|AW598081.1|AW598081
EST:     TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGACGTACTACAG                         GTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACGGTGCCCATATATG
genomic: TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGACGTACTACAGgtttgtttct ... tattaaacagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACGGTGCCCATATATG
EST: gi|24205144|gb|BU964397.1|BU964397
EST:     TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGACGTACTACAG                         GTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACGGTGCCCATATATG
genomic: TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGACGTACTACAGgtttgtttct ... tattaaacagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACGGTGCCCATATATG
EST: gi|213617998|gb|DB963631.1|DB963631
EST:     TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGACGTACTACAG                         GTATTGTGCTTGATTCTGGTGATGGTGTCAGCCACACGGTGCCCATATATG
genomic: TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGACGTACTACAGgtttgtttct ... tattaaacagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACGGTGCCCATATATG
EST: gi|213595648|gb|DB968528.1|DB968528
EST:     TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGACGTACTACAG                         GTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACGGTGCCCATATATG
genomic: TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGACGTACTACAGgtttgtttct ... tattaaacagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACGGTGCCCATATATG
EST: gi|9820851|gb|BE556361.1|BE556361
EST:     TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGACGTACTACAG                         GTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACGGTGCCCATATATG
genomic: TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGACGTACTACAGgtttgtttct ... tattaaacagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACGGTGCCCATATATG
EST: gi|193327238|gb|FK295821.1|FK295821
EST:     TGTTGCATTTCAGGCTGTCTTGTCTCTGTATGCCAGTGGACGTACTACAG                         GTATTGTGCTTGATTCTGGTGATGG
genomic: TGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGACGTACTACAGgtttgtttct ... tattaaacagGTATTGTGCTTGATTCTGGTGATGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttatgaccagcattatttccttattggtttgtcttgttatgttggtattaaacagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACGGTGCCCATATATGAAGGGTATGCTCTTCCTCATGCAATTCTTCGGTTGGACCTTGCTGGCCG
           attatttccttatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
attccacacgtacaagagtgggatatacatgcatttctacattaattatgaccagcattatttccttattggtttgtcttgttatgttggtattaaacagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACGGTGCCCATATATGAAGGGTATGCTCTTCCTCATGCAATTCTTCGGTTGGACCTTGCTGGCCG

- -ccacacg
- - - - - - - -gagtggg
- - - - - - - - - - - - - acatgca
- - - - - - - - - - - - - - - - - - ctacatt
- - - - - - - - - - - - - - - - - - - - - - - - - accagca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtcttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atgttgg