1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gttaggttcattatttttcatagcagactgtttcacttttattaaccaaactattacatttatgtggtgataacaatgatagttgatgttatgggttgaagcagcaccctgattgtttgctcctttcacttttcagCCTGGGCCACGGGATGGAATCATTCAATGTTTTATCAAAAGAGATAAATCTAATTTAACATACCACCTATTCCTTTGTCTCAGCCCTG
species | Glycine max |
transcript | GLYMA15G05490.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGAG-CCAGAGTTTTGTGGCAAACTTACATTCCCTGTGTCCTTGAAGCAG CCTGGGCCACGGGATGGAATCATTCAATGTTTTATCAAAAGAGATAAATCTEST: gi|207816550|gb|GD787419.1|GD787419
genomic: AGAGCCCAGAGTTTTGTGGCAAACTTACATTCCCTGTGTCCTTGAAGCAGgttaggttca ... cacttttcagCCTGGGCCACGGGATGGAATCATTCAATGTTTTATCAAAAGAGATAAATCT
EST: AGAGCCCAGAGTTTTGTGGCAAACTTACATTCCCTGTGTCCTTGAAGCAG CCTGGGCCACGGGATGGAATCATTCAATGTTTTATCAAAAGAGATAAATCTEST: gi|254325987|gb|GR838868.1|GR838868
genomic: AGAGCCCAGAGTTTTGTGGCAAACTTACATTCCCTGTGTCCTTGAAGCAGgttaggttca ... cacttttcagCCTGGGCCACGGGATGGAATCATTCAATGTTTTATCAAAAGAGATAAATCT
EST: AGAGCCCAGAGTTTTGTGGCAAACTTACATTCCCTGTGTCCTTGAAGCAG CCTGGGCCACGGGATGGAATCATTCAATGTTTTATCAAAAGAGATAAATCTEST: gi|207806804|gb|GD778385.1|GD778385
genomic: AGAGCCCAGAGTTTTGTGGCAAACTTACATTCCCTGTGTCCTTGAAGCAGgttaggttca ... cacttttcagCCTGGGCCACGGGATGGAATCATTCAATGTTTTATCAAAAGAGATAAATCT
EST: AGAGCCCAGAGTTTTGTGGCAAACTTACATTCCCTGTGTCCTTGAAGCAG CCTGGGCCACGGGATGGAATCATTCAATGTTTTANCAAAAGAGATAAATCTEST: gi|193420570|gb|FK390521.1|FK390521
genomic: AGAGCCCAGAGTTTTGTGGCAAACTTACATTCCCTGTGTCCTTGAAGCAGgttaggttca ... cacttttcagCCTGGGCCACGGGATGGAATCATTCAATGTTTTATCAAAAGAGATAAATCT
EST: AGAGCCCAGAGTTTTGTGGCAAACTTACATTCCCTGTGTCCTTGAAGCAG CCTGGGCCACGGGATGGAATCATTCAATGTTTTATCAAAAGAGATGAATCTEST: gi|193529709|gb|FK487336.1|FK487336
genomic: AGAGCCCAGAGTTTTGTGGCAAACTTACATTCCCTGTGTCCTTGAAGCAGgttaggttca ... cacttttcagCCTGGGCCACGGGATGGAATCATTCAATGTTTTATCAAAAGAGATAAATCT
EST: AGAGCCCAGAGTTTTGTGGCAAACTTACATTCCCTGTGTCCTTGGAGCAG CCTGGGCCACGGGATGGAATCATTCAATGTTTTATCAAAAGAGATAAEST: gi|9440416|gb|BE440921.1|BE440921
genomic: AGAGCCCAGAGTTTTGTGGCAAACTTACATTCCCTGTGTCCTTGAAGCAGgttaggttca ... cacttttcagCCTGGGCCACGGGATGGAATCATTCAATGTTTTATCAAAAGAGATAA
EST: AGAGCCCAGAGTTTTGTGGCAAACTTACATTCCCTGTGTCCTTGAAGCAG CCTGGGCCACGGGATGGAATCATTCAATGTTTTATCAAAAGAGATAAATCTEST: gi|208084291|gb|GD882281.1|GD882281
genomic: AGAGCCCAGAGTTTTGTGGCAAACTTACATTCCCTGTGTCCTTGAAGCAGgttaggttca ... cacttttcagCCTGGGCCACGGGATGGAATCATTCAATGTTTTATCAAAAGAGATAAATCT
EST: AGAGCCCAGAGTTTTGTGGCAAACTTACATTCCCTGTGTCCTTGAAGCAG CCTGGGCCACGGGATGGAATCATTCAATGTTTTATCAAAAGEST: gi|208308909|gb|GE104087.1|GE104087
genomic: AGAGCCCAGAGTTTTGTGGCAAACTTACATTCCCTGTGTCCTTGAAGCAGgttaggttca ... cacttttcagCCTGGGCCACGGGATGGAATCATTCAATGTTTTATCAAAAG
EST: AGAGCCCAGAGTTTTGTGGCAAACTTACATTCCCTGTGTCCTTGAAGCAG CCTGGGCCACGGGATGGAATCATTCAATGTTTTATCAAAAGAGATAAATCTEST: gi|208037728|gb|GD833642.1|GD833642
genomic: AGAGCCCAGAGTTTTGTGGCAAACTTACATTCCCTGTGTCCTTGAAGCAGgttaggttca ... cacttttcagCCTGGGCCACGGGATGGAATCATTCAATGTTTTATCAAAAGAGATAAATCT
EST: AGAGCCCAGAGTTTTGTGGCAAACTTACATTCCCTGTGTCCTTGAAGCAG CCTGGGCCACGGGATGGAATCATTCAATGTTTTATCEST: gi|208325460|gb|GE120122.1|GE120122
genomic: AGAGCCCAGAGTTTTGTGGCAAACTTACATTCCCTGTGTCCTTGAAGCAGgttaggttca ... cacttttcagCCTGGGCCACGGGATGGAATCATTCAATGTTTTATC
EST: AGAGCCCAGAGTTTTGTGGCAAACTTACATTCCCTGTGTCCTTGAAGCAG CCTGGGCCACGGGATGGAATCATTCAATGTTTTATCAAAAGAGATAAATCTEST: gi|208183773|gb|GD985705.1|GD985705
genomic: AGAGCCCAGAGTTTTGTGGCAAACTTACATTCCCTGTGTCCTTGAAGCAGgttaggttca ... cacttttcagCCTGGGCCACGGGATGGAATCATTCAATGTTTTATCAAAAGAGATAAATCT
EST: AGACCCAAGAGTTTTGTGGCAAACTTACATTCCCTGTGTCCTTGAAGCAG CCTGGGCCACGGGATGGAATCATTCAATGTTTTATCAAAAGAGATAAATCTEST: gi|193641904|gb|FK591120.1|FK591120
genomic: AG-CCC-AGAGTTTTGTGGCAAACTTACATTCCCTGTGTCCTTGAAGCAGgttaggttca ... cacttttcagCCTGGGCCACGGGATGGAATCATTCAATGTTTTATCAAAAGAGATAAATCT
EST: AGAGCCCAGAGTTTTGTGGCAAACTTACATTCCCTGTGTCCTTGAAGCAG CCTGGGCCACGGGATGGAATCATTCAATGTTTTATCAAAAGAGATAAATCTEST: gi|192295815|gb|FG990867.1|FG990867
genomic: AGAGCCCAGAGTTTTGTGGCAAACTTACATTCCCTGTGTCCTTGAAGCAGgttaggttca ... cacttttcagCCTGGGCCACGGGATGGAATCATTCAATGTTTTATCAAAAGAGATAAATCT
EST: AGAGCCCAGAGTTTTGTGGCAAACTTACATTCCCTGTGTCCTTGAAGCAG CCTGGGCCACGGGATGGAATCATTCAATGTTTTATCAAAAGAGATAAATCTEST: gi|151394349|gb|EV264220.1|EV264220
genomic: AGAGCCCAGAGTTTTGTGGCAAACTTACATTCCCTGTGTCCTTGAAGCAGgttaggttca ... cacttttcagCCTGGGCCACGGGATGGAATCATTCAATGTTTTATCAAAAGAGATAAATCT
EST: AGAGCCCAGAGTTTTGTGGCAAACTTACATTCCCTGTGTCCTTGAAGCAG CCTGGGCCACGGGATGGAATCATTCAATGTTTTATCAAAAGAGATAAATCTEST: gi|208069109|gb|GD869087.1|GD869087
genomic: AGAGCCCAGAGTTTTGTGGCAAACTTACATTCCCTGTGTCCTTGAAGCAGgttaggttca ... cacttttcagCCTGGGCCACGGGATGGAATCATTCAATGTTTTATCAAAAGAGATAAATCT
EST: AGAGCCCAGAGTTTTGTGGCAAACTTACATTCCCTGTGTCCTTGAAGCAG CCTGGGCCACGGGATGGAATCATTCAATGTTTTATCAAAAGAGATAAATCTEST: gi|207771965|gb|GD743482.1|GD743482
genomic: AGAGCCCAGAGTTTTGTGGCAAACTTACATTCCCTGTGTCCTTGAAGCAGgttaggttca ... cacttttcagCCTGGGCCACGGGATGGAATCATTCAATGTTTTATCAAAAGAGATAAATCT
EST: AGAGCCCAGAGTTTTGTGGCAAACTTACATTCCCTGTGTCCTTGAAGCAG CCTGGGCCACGGGATGGAATCATTCAATGTTTTATCAAAAGAGATAAATCT
genomic: AGAGCCCAGAGTTTTGTGGCAAACTTACATTCCCTGTGTCCTTGAAGCAGgttaggttca ... cacttttcagCCTGGGCCACGGGATGGAATCATTCAATGTTTTATCAAAAGAGATAAATCT
gttgatgttatgggttgaagcagcaccctgattgtttgctcctttcacttttcagCCTGGGCCACGGGATGGAATCATTCAATGTTTTATCAAAAGAGATAAATCTAATTTAACATACCACCTATTCCTTTGTCTCAGCCCTG
ccctgat putative branch site (score: 4)
ttgtttgctcctttca CT-rich tract
attgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttaggttcattatttttcatagcagactgtttcacttttattaaccaaactattacatttatgtggtgataacaatgatagttgatgttatgggttgaagcagcaccctgattgtttgctcctttcacttttcagCCTGGGCCACGGGATGGAATCATTCAATGTTTTATCAAAAGAGATAAATCTAATTTAACATACCACCTATTCCTTTGTCTCAGCCCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA