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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatcttaattatttaatgtcttggttgctcactttgatttgtcatctgactcctcattgttcataattgatgataagtgggggcggtgcttcaaaattcgaacgaatgtagtgtatttacaatatctgtttaccccatccgacaaagggaaatgtaggagtgtgtttttatcttaatctgtgtttgggaatgaagGTGGATGATGGGGAGTTGCCTGAAGATGCTGGTGCAGGACAGGATGGGAAGACAAAGGATTCAGCGAACGAAGCTGTCAATGGGACTGCTGCAGTGGTCC

Basic information

species Glycine max
transcript GLYMA15G05410.5
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298196968|gb|HO041735.1|HO041735
EST:     CTGAAGATCAACCTCCTGCTAAACGTCGACTTTCATCTGCTGTCGTTAAG                         GTGGATGATGGGGAGTTGCCTGAAGATGCTGGTGCAGGACAGGATGGGAAG
genomic: CTGAAGATCAACCTCCTGCTAAACGTCGACTTTCATCTGCTGTCGTTAAGgtatcttaat ... gggaatgaagGTGGATGATGGGGAGTTGCCTGAAGATGCTGGTGCAGGACAGGATGGGAAG
EST: gi|193618093|gb|FK567065.1|FK567065
EST:     CTGAAGATCAACCTCCTGCTAAACGTCGACTTTCATCTGCTGTCGTTAAG                         GTGGATGATGGGGAGTTGCCTGAAGATGCTGGTGCAGGACAGGATGGGAAG
genomic: CTGAAGATCAACCTCCTGCTAAACGTCGACTTTCATCTGCTGTCGTTAAGgtatcttaat ... gggaatgaagGTGGATGATGGGGAGTTGCCTGAAGATGCTGGTGCAGGACAGGATGGGAAG
EST: gi|207757889|gb|GD727697.1|GD727697
EST:     CTGAAGATCAACCTCCTGCTAAACGTCGACTTTCATCTGCCGTCGTTAAG                         GTGGATGATGGGGGAGTTGCCTGAAGATGCTGGTGCAGGACAGGATGGGAA
genomic: CTGAAGATCAACCTCCTGCTAAACGTCGACTTTCATCTGCTGTCGTTAAGgtatcttaat ... gggaatgaagGTGGATGAT-GGGGAGTTGCCTGAAGATGCTGGTGCAGGACAGGATGGGAA
EST: gi|207770399|gb|GD744141.1|GD744141
EST:     CTGAAGATCAACCTCCTGCTAAACGTCGACTTTCATCTGCTGTCGTTAAG                         GTGGATGATGGGGAGTTGCCTGAAGATGCTGGTGCAGGACAGGATGGGAAG
genomic: CTGAAGATCAACCTCCTGCTAAACGTCGACTTTCATCTGCTGTCGTTAAGgtatcttaat ... gggaatgaagGTGGATGATGGGGAGTTGCCTGAAGATGCTGGTGCAGGACAGGATGGGAAG
EST: gi|7925292|gb|AW831318.1|AW831318
EST:     CTGAAGATCAACCTCCTGCTAAACGTCGACTTTCATCTGCTGTCGTTAAG                         GTGGATGATGGGGAGTTGCCTGAAGATGCTGGTGCAGGACAGGATGGGAAG
genomic: CTGAAGATCAACCTCCTGCTAAACGTCGACTTTCATCTGCTGTCGTTAAGgtatcttaat ... gggaatgaagGTGGATGATGGGGAGTTGCCTGAAGATGCTGGTGCAGGACAGGATGGGAAG
EST: gi|193410651|gb|FK375868.1|FK375868
EST:     CTGAAGATCAACCTCCTGCTAAACGTCGACTTTCATCTGCTGTCGTTAAG                         GTGGATGATGGGGAGTTGCCTGAAGATGCTGGTGCAGGACAGGATGGGAAG
genomic: CTGAAGATCAACCTCCTGCTAAACGTCGACTTTCATCTGCTGTCGTTAAGgtatcttaat ... gggaatgaagGTGGATGATGGGGAGTTGCCTGAAGATGCTGGTGCAGGACAGGATGGGAAG
EST: gi|208256506|gb|GE051819.1|GE051819
EST:     CTGAAGATCAACCTCCTGCTAAACGTCGACCTTCATCTGCTGTCGTTAAG                         GTGGATGATGGGGAGTTGCCTGAAGATGCTGGTGCAGGACAGGATGGGAAG
genomic: CTGAAGATCAACCTCCTGCTAAACGTCGACTTTCATCTGCTGTCGTTAAGgtatcttaat ... gggaatgaagGTGGATGATGGGGAGTTGCCTGAAGATGCTGGTGCAGGACAGGATGGGAAG
EST: gi|213590293|gb|DB963856.1|DB963856
EST:     CTGAAGATCAACCTCCTGCTAAACGTCGGCTTTCATCTGCTGTCGTTAAG                         GTGGATGATGGGGAGTTGCCTGAAGATGCTGGTGCAGGACAGGATGGGAAG
genomic: CTGAAGATCAACCTCCTGCTAAACGTCGACTTTCATCTGCTGTCGTTAAGgtatcttaat ... gggaatgaagGTGGATGATGGGGAGTTGCCTGAAGATGCTGGTGCAGGACAGGATGGGAAG
EST: gi|208167736|gb|GD963834.1|GD963834
EST:     CTGAAGATCAACCTCCTGCTAAACGTCGACTTTCATCTGCTGTCGTTAAG                         GTGGATGATGGGGAGTTGCCTGAAGATGCTGGT
genomic: CTGAAGATCAACCTCCTGCTAAACGTCGACTTTCATCTGCTGTCGTTAAGgtatcttaat ... gggaatgaagGTGGATGATGGGGAGTTGCCTGAAGATGCTGGT
EST: gi|254317253|gb|GR826198.1|GR826198
EST:     CTGAAGATCAACCTCCTGCTAAACGTCGACTTTCATCTGCTGTCGTTGAG                         GTGGATGATGGGGAGTTGCCTGAGGATGCTGGTGCAGGACAGGATGGGAAG
genomic: CTGAAGATCAACCTCCTGCTAAACGTCGACTTTCATCTGCTGTCGTTAAGgtatcttaat ... gggaatgaagGTGGATGATGGGGAGTTGCCTGAAGATGCTGGTGCAGGACAGGATGGGAAG
EST: gi|193531016|gb|FK487551.1|FK487551
EST:     CTGAAGATCAACCTCCTGCTAAACGTCGACTTTCATCTGCTATCGTTAAG                         GTGGATGATGGGGAGTTGCCTGAAGATGCTGGTGCAGGACAGGATGGGAAG
genomic: CTGAAGATCAACCTCCTGCTAAACGTCGACTTTCATCTGCTGTCGTTAAGgtatcttaat ... gggaatgaagGTGGATGATGGGGAGTTGCCTGAAGATGCTGGTGCAGGACAGGATGGGAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gacaaagggaaatgtaggagtgtgtttttatcttaatctgtgtttgggaatgaagGTGGATGATGGGGAGTTGCCTGAAGATGCTGGTGCAGGACAGGATGGGAAGACAAAGGATTCAGCGAACGAAGCTGTCAATGGGACTGCTGCAGTGGTCC
                              tcttaat  putative branch site (score: 3)
                      tgtttttatcttaat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatcttaattatttaatgtcttggttgctcactttgatttgtcatctgactcctcattgttcataattgatgataagtgggggcggtgcttcaaaattcgaacgaatgtagtgtatttacaatatctgtttaccccatccgacaaagggaaatgtaggagtgtgtttttatcttaatctgtgtttgggaatgaagGTGGATGATGGGGAGTTGCCTGAAGATGCTGGTGCAGGACAGGATGGGAAGACAAAGGATTCAGCGAACGAAGCTGTCAATGGGACTGCTGCAGTGGTCC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG