1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tgattgttactgttagcattttcctactctgtcattcattcttaggtgttcgggtttctgtctcactctgacttgatttttttgttgatgccatttgcagGCTGTTTAAAGAATTTGAGGAATATGACTTTGCAAGAACAGGAAGCATTGCCACTGAAAAGGTAATTGGAGTTAGTTCTTATGATTATGATTTTTTCATA
species | Glycine max |
transcript | GLYMA15G05360.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GGAGATTCTGGGATGTTTTTCACCAATTTGTCTAAGGAAGAAGTTGAAAG GCTGTTTAAAGAATTTGAGGAATATGACTTTGCAAGAACAGGAAGCATTGCEST: gi|58019534|gb|CX706276.1|CX706276
genomic: GGAGATTCTGGGATGTTTTTCACCAATTTGTCTAAGGAAGAAGTTGAAAGgtaaccttgg ... ccatttgcagGCTGTTTAAAGAATTTGAGGAATATGACTTTGCAAGAACAGGAAGCATTGC
EST: CTGGGATGTTTTTCACCAATTTGTCTAAGGAAGAAGTTGAAAG GCTGTTTAAAGAATTTGAGGAATATGACTTTGCAAGAACAGGAAGCATTGCEST: gi|192297508|gb|FG989881.1|FG989881
genomic: CTGGGATGTTTTTCACCAATTTGTCTAAGGAAGAAGTTGAAAGgtaaccttgg ... ccatttgcagGCTGTTTAAAGAATTTGAGGAATATGACTTTGCAAGAACAGGAAGCATTGC
EST: GGAGATTCTGGGATGTTTTTCACCAATTTGTCTAAGGAAGAAGTTGAAAG GCTGTTTAAAGAATTTGAGGAATATGACTTTGCAAGAACAGGAAGCATTGCEST: gi|192314243|gb|FK006981.1|FK006981
genomic: GGAGATTCTGGGATGTTTTTCACCAATTTGTCTAAGGAAGAAGTTGAAAGgtaaccttgg ... ccatttgcagGCTGTTTAAAGAATTTGAGGAATATGACTTTGCAAGAACAGGAAGCATTGC
EST: GGAGATTCTGGGATGTTTTTCACCAATTTGTCTAAGGAAGAAGTTGAAAG GCTGTTTAAAGAATTTGAGGAATATGACTTTGCAAGAACAGGAAGCATTGCEST: gi|298192153|gb|HO036235.1|HO036235
genomic: GGAGATTCTGGGATGTTTTTCACCAATTTGTCTAAGGAAGAAGTTGAAAGgtaaccttgg ... ccatttgcagGCTGTTTAAAGAATTTGAGGAATATGACTTTGCAAGAACAGGAAGCATTGC
EST: GGAGATTCTGGGATGTTTTTCACCAATTTGTCTAAGGAAGAAGTTGAAAG GCTGTTTAAAGAATTTGAGGAATATGACTTTGCAAGAACAGGAAGCATTGC
genomic: GGAGATTCTGGGATGTTTTTCACCAATTTGTCTAAGGAAGAAGTTGAAAGgtaaccttgg ... ccatttgcagGCTGTTTAAAGAATTTGAGGAATATGACTTTGCAAGAACAGGAAGCATTGC
gtgttcgggtttctgtctcactctgacttgatttttttgttgatgccatttgcagGCTGTTTAAAGAATTTGAGGAATATGACTTTGCAAGAACAGGAAGCATTGCCACTGAAAAGGTAATTGGAGTTAGTTCTTATGATTATGATTTTTTCATA
ttgatttttttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgattgttactgttagcattttcctactctgtcattcattcttaggtgttcgggtttctgtctcactctgacttgatttttttgttgatgccatttgcagGCTGTTTAAAGAATTTGAGGAATATGACTTTGCAAGAACAGGAAGCATTGCCACTGAAAAGGTAATTGGAGTTAGTTCTTATGATTATGATTTTTTCATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - -gttactg
- - - - - - - - - - - - - - - - cattcat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gttgatg